Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O03
         (1213 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312...    30   3.2  
03_06_0599 + 34984869-34985319,34986581-34987563                       29   5.6  
03_02_0765 + 11000724-11002496                                         29   5.6  
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    29   7.4  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   7.4  
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    29   9.7  

>02_03_0388 +
           18429538-18430598,18430971-18431081,18431165-18431237,
           18431513-18431695
          Length = 475

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP+ PRP P    AP   PP
Sbjct: 113 PTPPQAPRPAPSKSRAPQAPPP 134


>03_06_0599 + 34984869-34985319,34986581-34987563
          Length = 477

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP  P PPP     PS  PP
Sbjct: 402 PQPPPPPPPPPHQRETPSPSPP 423


>03_02_0765 + 11000724-11002496
          Length = 590

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 21/68 (30%), Positives = 22/68 (32%)
 Frame = -2

Query: 414 GGAGGGXGGXXXRXXXXXXXXXXGREXKAXEXXXGGVRXGDXGGXXLAXXVXXGXEXSMX 235
           GGAGGG GG              G    A     GG+  G  GG  L      G      
Sbjct: 248 GGAGGGLGGGAGGGGGLSGGAGGGLGGGAGAGGGGGLGGGTGGGGGLGGGTGGGGGLGGG 307

Query: 234 VRGXAGGG 211
             G  GGG
Sbjct: 308 AGGGLGGG 315


>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP  P PPP    AP   PP
Sbjct: 583 PVPPPEPSPPPAPKAAPPPPPP 604


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP+ P PPP +   P   PP
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPP 359


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP  P PPP    AP   PP
Sbjct: 355 PPPPPPPPPPPKLNTAPKPPPP 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,224,358
Number of Sequences: 37544
Number of extensions: 119014
Number of successful extensions: 3488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3125
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3713048988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)