Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O03
         (1213 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               30   3.2  
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)                 30   3.2  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  30   3.2  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.6  
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               29   7.5  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  
SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +3

Query: 276 TXXPXCPPALXPLXSXPXPSFLCPQVXXAVWPLPXXPXPRRRPRXXP 416
           T  P  PP   P  S P P  L P +     PLP  P   R P+  P
Sbjct: 631 TTVPPLPPTPPPRQSTPPPLLLIPLLPLLTLPLP--PPTVRHPQATP 675


>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
          Length = 258

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
 Frame = -1

Query: 415 GXXRGRRRGXGXXGSGXTAXXTWGQRXEGXGXLXRGXKAGGQXGXXVSXXRXXG--XRXE 242
           G  RGR RG G  G G      +G    G G    G   GG  G   S     G      
Sbjct: 159 GGYRGRGRGGGGYGGGGYGGGGYGGGGHGGGGYGGGGYGGGGGGYGGSGYGGGGGYGGGG 218

Query: 241 HXGSRXXXGG 212
           + G R   GG
Sbjct: 219 YGGGRSGGGG 228


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 672 GXSXXPXPPRXPRPPPXSXXAPSXXPP 752
           G +  P PP  P PPP S   P   PP
Sbjct: 360 GINMSPPPPPPPPPPPPSPPPPPPPPP 386



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP  P PPP S   P   PP
Sbjct: 376 PSPPPPPPPPPPSPPPPPQPPP 397



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP  P PPP    AP   PP
Sbjct: 404 PPPPPPPPPPPPPPPAPPPPPP 425


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 687  PXPPRXPRPPPXSXXAPSXXPP 752
            P PP  P PPP S  +P   PP
Sbjct: 1157 PPPPPPPPPPPPSSPSPPPPPP 1178



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 687  PXPPRXPRPPPXSXXAPSXXPP 752
            P PP  P PPP S   P   PP
Sbjct: 1158 PPPPPPPPPPPSSPSPPPPPPP 1179


>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP  P PPP    AP   PP
Sbjct: 225 PPPPAAPAPPPPPAAAPPPPPP 246


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP  P PPP    AP   PP
Sbjct: 315 PPPPPPPPPPPGDGGAPPPPPP 336


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 687 PXPPRXPRPPPXSXXAPSXXPP 752
           P PP  P PPP     PS  PP
Sbjct: 687 PPPPPPPPPPPPPPPQPSTPPP 708


>SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 16/55 (29%), Positives = 20/55 (36%)
 Frame = +3

Query: 228 REPXCSXRXPXXRXXLTXXPXCPPALXPLXSXPXPSFLCPQVXXAVWPLPXXPXP 392
           R P  +   P  R   T  P  PP   P+   P P+   P       P+P  P P
Sbjct: 31  RAPPPNTAIPGDRPPNTPIPGDPPPNIPIPGNPPPNTPIPGDPPPNTPIPGDPPP 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,697
Number of Sequences: 59808
Number of extensions: 63278
Number of successful extensions: 949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3763429615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)