Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O03
         (1213 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28490.1 68415.m03462 cupin family protein similar to preproM...    29   6.1  
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ...    29   8.1  

>At2g28490.1 68415.m03462 cupin family protein similar to
           preproMP27-MP32 [Cucurbita cv. Kurokawa Amakuri]
           GI:691752, allergen Gly m Bd 28K [Glycine max]
           GI:12697782, vicilin [Matteuccia struthiopteris]
           GI:1019792; contains Pfam profile PF00190: Cupin
          Length = 511

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = -1

Query: 415 GXXRGRRRGXGXXGSGXTAXXTWGQRXEGXGXLXRGXKAGG 293
           G   G   G G  G G      WG   EG G    G + GG
Sbjct: 39  GGEWGGAEGGGAWGGGGGGGGAWGGEGEGGGEWGGGGEGGG 79


>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
           PF03005: Arabidopsis proteins of unknown function
          Length = 451

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 678 SXXPXPPRXPRPPPXSXXAPSXXPP 752
           S  P  P  P PPP S   PS  PP
Sbjct: 71  SPPPPSPPPPSPPPPSPPPPSPPPP 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,771,245
Number of Sequences: 28952
Number of extensions: 64173
Number of successful extensions: 1249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3093614080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)