Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O02
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 33 0.27
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.36
11_01_0066 - 536281-537196,537397-537452 30 2.5
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 3.3
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 3.3
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 29 5.8
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 29 5.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.8
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 28 7.7
11_01_0801 - 7071455-7071847 28 7.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 7.7
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 7.7
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Frame = +1
Query: 589 PXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPP----FXXGPXPKKXXXXXPPX 756
P PP + PP+ PPPP G PP F GP P + PP
Sbjct: 27 PYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPP 86
Query: 757 GXGXXFFXXXPPP 795
++ PPP
Sbjct: 87 ---QMYYQPPPPP 96
Score = 28.3 bits (60), Expect = 7.7
Identities = 29/104 (27%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Frame = +1
Query: 478 PQGAPXXF-SPXNPXXXFPXGGXXPXF*KRKKNFXKGXPXX----PPXKKXXXXXXFFPP 642
PQGAP F +P P P P F NF G P PP + PP
Sbjct: 44 PQGAPPPFLAPPPPPPPGPPPPHQPQF-----NFGPGPPQQQQPPPPPQMYYQPPPPPPP 98
Query: 643 KKILXG-------PXXAPPPPXXGAXPPFXXGPXPKKXXXXXPP 753
+ P +PPP PP P P++ PP
Sbjct: 99 YGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPP 142
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.7 bits (71), Expect = 0.36
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = +1
Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
PPK P PPPP PP GP P PP PPP
Sbjct: 318 PPKPAAAAPPP-PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
Score = 31.5 bits (68), Expect = 0.83
Identities = 24/74 (32%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Frame = +1
Query: 589 PXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXG---PXPKKXXXXXPPXG 759
P PP K PP P PPPP PP G P P K PP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPP---PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
Query: 760 XGXXFFXXXPPPXK 801
G PPP K
Sbjct: 370 PGGKKGGPPPPPPK 383
Score = 31.5 bits (68), Expect = 0.83
Identities = 22/62 (35%), Positives = 22/62 (35%)
Frame = +1
Query: 580 KGXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXG 759
K P PP K PP GP PPPP G PP P KK PP
Sbjct: 333 KAAPPPPPPKGP-------PPPPPAKGPP--PPPPPKGPSPPPPPPPGGKKGGPPPPPPK 383
Query: 760 XG 765
G
Sbjct: 384 GG 385
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +1
Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPP 753
PP+ + P +PPPP PP P P PP
Sbjct: 206 PPRPL---PPASPPPPSIATPPPSPASPPPPSTATPPPP 241
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +1
Query: 670 APPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
APPPP G+ P G P PP G PPP
Sbjct: 422 APPPPPPGSYAPVPWGQPPPYASYPPPPPGSS---MYNPPPP 460
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = +1
Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGP---XPKKXXXXXPPXGXGXXFFXXXPPP 795
PP + P PPPP G PP P P + P G F PP
Sbjct: 284 PPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPPPPMTGGAMANFTPGAPP 339
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +2
Query: 398 GGAPXPLKIXPXXXGGXPXTXGXXXPPPKGPPXXFPXXTPXXXSP 532
GG P + P GG P PP GPP P P
Sbjct: 138 GGPPSAMSQGPLPFGGPPAAVASQPPPFGGPPVAAAQPPPFGRPP 182
>05_01_0460 -
3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 670 APPPPXXGAXPPFXXGPXPKKXXXXXPPXG 759
APPPP GA PP P P PP G
Sbjct: 4 APPPPGTGAPPP----PLPAAAAAAGPPGG 29
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/71 (28%), Positives = 20/71 (28%)
Frame = +1
Query: 583 GXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGX 762
G P PP P G PPPP A P P P PP G
Sbjct: 319 GAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGP--GPGPPPPPGA 376
Query: 763 GXXFFXXXPPP 795
PPP
Sbjct: 377 AGRGGGGPPPP 387
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGP 720
PP ++ P APP GA P F GP
Sbjct: 258 PPPQLFNWPGHAPPQLPPGASPLFPPGP 285
>11_01_0801 - 7071455-7071847
Length = 130
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 661 PXXAPPPPXXGAXPPFXXGPXPKK 732
P PPPP GA P P P++
Sbjct: 39 PARRPPPPRFGADSPLRPAPPPRR 62
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +1
Query: 661 PXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
P PPPP G P F P P PP PPP
Sbjct: 546 PPPPPPPPPSGNKPAF--SPPPPPPPPPPPPLPQSNYASSQPPPP 588
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGP 720
PP ++ P PP P PPF GP
Sbjct: 413 PPAQMQMAPFGVPPGPPPMLPPPFYPGP 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,688,011
Number of Sequences: 37544
Number of extensions: 301835
Number of successful extensions: 1324
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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