Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O02
         (816 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.37 
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               32   0.64 
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         31   0.84 
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   31   1.5  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)                   29   4.5  
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)                       29   4.5  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   6.0  
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXP 750
           PP  +   P   PPPP  G  PPF  GP P +     P
Sbjct: 471 PPMGMYPPPRGFPPPPF-GPPPPFYRGPPPPRGMPPPP 507



 Score = 32.3 bits (70), Expect = 0.48
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = +1

Query: 661 PXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
           P   PPP      PP   G  P       PP G    F+   PPP
Sbjct: 456 PNLPPPPGGMRGMPPPPMGMYPPPRGFPPPPFGPPPPFYRGPPPP 500


>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +1

Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPP 753
           PP      P   PPPP  GA PP    P P       PP
Sbjct: 294 PPPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDGGAPP 332


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = +1

Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
           PP  ++ G   + PPP     PP   G  P       PP G         PPP
Sbjct: 681 PPLPVIEGSSLSVPPPPPPPPPPLLSGTLPMPPPPPPPPPGCAG---LPPPPP 730



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/58 (31%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
 Frame = +1

Query: 637 PPKKILXG-----PXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
           PP  +L G     P   PPPP     PP    P P       PP           PPP
Sbjct: 700 PPPPLLSGTLPMPPPPPPPPPGCAGLPPPPPSPQPGCAGLPPPPPPPPPGCAGLPPPP 757


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 673 PPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
           PPPP  GA PP   G  P       PP           PPP
Sbjct: 338 PPPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPP 378



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
 Frame = +1

Query: 673 PPPPXXGA--XPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPPXKK 804
           PPPP  GA   PP    P P       PP           PPP  +
Sbjct: 288 PPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSR 333



 Score = 28.3 bits (60), Expect = 7.9
 Identities = 19/72 (26%), Positives = 23/72 (31%)
 Frame = +1

Query: 580 KGXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXG 759
           +G P  PP +         PP ++   P   PP       PP   G  P       PP  
Sbjct: 302 RGAPPPPPSRGSAPPP---PPARMGTAPPPPPPSRSSQRPPPPSRGAPPPPSMGMAPPPV 358

Query: 760 XGXXFFXXXPPP 795
            G       PPP
Sbjct: 359 GGAAPPPPPPPP 370


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/65 (29%), Positives = 21/65 (32%)
 Frame = +1

Query: 559  KRKKNFXKGXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXX 738
            KRK +     P  PP K         PP  +   P   P PP     PP    P P    
Sbjct: 1030 KRKASPPSAQPLPPPRKPSP------PPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQ 1083

Query: 739  XXXPP 753
               PP
Sbjct: 1084 PVPPP 1088


>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
          Length = 1052

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = +1

Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPPXKK 804
           PP K +  P    PPP     PP+   P P K      P       +   PPP K+
Sbjct: 733 PPYKQVPHPYKQVPPPYKQVPPPYKQVPHPYK--QVPAPYKQVPAPYKQVPPPYKR 786


>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
          Length = 315

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
 Frame = +3

Query: 477 PPRG-PPXIFPXXPPLXXPPXGXXPXXLXXXXXXXXRXPQXPPXKKXXPXXXFFPPQ 644
           PPR  PP IFP  PP   PP    P             P  PP  +  P     PP+
Sbjct: 163 PPRTQPPPIFPIDPPRTQPP--PIPPIDPPRTQPPPIPPIDPPRTQPPPIPPIDPPR 217


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/53 (30%), Positives = 16/53 (30%)
 Frame = +1

Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
           PP      P   PPPP     PP    P P       PP           PPP
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422


>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/55 (27%), Positives = 16/55 (29%)
 Frame = +3

Query: 477 PPRGPPXIFPXXPPLXXPPXGXXPXXLXXXXXXXXRXPQXPPXKKXXPXXXFFPP 641
           PP  PP   P   P   PP    P             P  PP     P   + PP
Sbjct: 110 PPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPP 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,036
Number of Sequences: 59808
Number of extensions: 247461
Number of successful extensions: 973
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)