Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_O02
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 36 0.026
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 36 0.026
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 36 0.026
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.56
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.56
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.56
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.3
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.3
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 4.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 9.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 36.3 bits (80), Expect = 0.026
Identities = 24/71 (33%), Positives = 24/71 (33%)
Frame = +1
Query: 583 GXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGX 762
G PP PP I GP PPPP G PP GP P PP
Sbjct: 702 GSSALPPITGGPPPPPGLPP--ITGGP---PPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
Query: 763 GXXFFXXXPPP 795
G PPP
Sbjct: 757 GPP--PPPPPP 765
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 36.3 bits (80), Expect = 0.026
Identities = 24/71 (33%), Positives = 24/71 (33%)
Frame = +1
Query: 583 GXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGX 762
G PP PP I GP PPPP G PP GP P PP
Sbjct: 702 GSSALPPITGGPPPPPGLPP--ITGGP---PPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
Query: 763 GXXFFXXXPPP 795
G PPP
Sbjct: 757 GPP--PPPPPP 765
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 36.3 bits (80), Expect = 0.026
Identities = 24/71 (33%), Positives = 24/71 (33%)
Frame = +1
Query: 583 GXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGX 762
G PP PP I GP PPPP G PP GP P PP
Sbjct: 285 GSSALPPITGGPPPPPGLPP--ITGGP---PPPPPPGGLPPITGGPPPPPPPGGLPPISG 339
Query: 763 GXXFFXXXPPP 795
G PPP
Sbjct: 340 GPP--PPPPPP 348
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/71 (33%), Positives = 25/71 (35%)
Frame = +1
Query: 583 GXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGX 762
G P PP K PP L G PPPP G+ PP G P PP
Sbjct: 235 GSPPPPPPPKGS------PP---LAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 285
Query: 763 GXXFFXXXPPP 795
G PPP
Sbjct: 286 G----GSPPPP 292
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = +1
Query: 670 APPPPXXGAXPPFXXG---PXPKKXXXXXPPXGXGXXFFXXXPPP 795
+PPPP G+ PP G P P+ PP G PPP
Sbjct: 271 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/71 (33%), Positives = 25/71 (35%)
Frame = +1
Query: 583 GXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGX 762
G P PP K PP L G PPPP G+ PP G P PP
Sbjct: 256 GSPPPPPPPKGS------PP---LAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 306
Query: 763 GXXFFXXXPPP 795
G PPP
Sbjct: 307 G----GSPPPP 313
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = +1
Query: 670 APPPPXXGAXPPFXXG---PXPKKXXXXXPPXGXGXXFFXXXPPP 795
+PPPP G+ PP G P P+ PP G PPP
Sbjct: 292 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.56
Identities = 24/71 (33%), Positives = 25/71 (35%)
Frame = +1
Query: 583 GXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGX 762
G P PP K PP L G PPPP G+ PP G P PP
Sbjct: 241 GSPPPPPPPKGS------PP---LAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 291
Query: 763 GXXFFXXXPPP 795
G PPP
Sbjct: 292 G----GSPPPP 298
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Frame = +1
Query: 670 APPPPXXGAXPPFXXG---PXPKKXXXXXPPXGXGXXFFXXXPPP 795
+PPPP G+ PP G P P+ PP G PPP
Sbjct: 277 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGP 720
PP + + P PPP G PP GP
Sbjct: 1469 PPPRGMNSPMRGMPPPMRGGGPPMRGGP 1496
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = +1
Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
PP + G APPPP G PP P PP F PPP
Sbjct: 707 PPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPM-FQQGFNAGAPPP 758
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/87 (27%), Positives = 26/87 (29%)
Frame = +1
Query: 535 GGXXPXF*KRKKNFXKGXPXXPPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPPFXX 714
GG P NF PP F P+ GP PPP G P
Sbjct: 365 GGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGP-GGPGGYGPPPPGGPGAPGSY 423
Query: 715 GPXPKKXXXXXPPXGXGXXFFXXXPPP 795
GP PP G + PPP
Sbjct: 424 GPPQGGPGGFGPPPPGGPGAY--GPPP 448
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +1
Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
PP P PPPP PP G P P G G PPP
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG--MPPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +1
Query: 637 PPKKILXGPXXAPPPPXXGAXPPFXXGPXPKKXXXXXPPXGXGXXFFXXXPPP 795
PP P PPPP PP G P P G G PPP
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG--MPPPPPP 349
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 9.2
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Frame = +1
Query: 598 PPXKKXXXXXXFFPPKKILXGPXXAPPPPXXGAXPP----FXXG-PXPKKXXXXXPPXGX 762
PP + F PP + G PPPP G PP F G P P PP
Sbjct: 53 PPGQSIPKPSFFIPPP-VPNG--FIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP-- 107
Query: 763 GXXFFXXXPPP 795
F PPP
Sbjct: 108 -PPMFGAPPPP 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,777,062
Number of Sequences: 27780
Number of extensions: 225769
Number of successful extensions: 814
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -