Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_O02
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
 Frame = +2

Query: 350 TXXXXPLXXXQXXSFSGGAPXPL----KIXPXXXGGXPXTXGXXXPPPKGPPXXFPXXTP 517
           T    P+   Q    S GAP P     +       G P       PPP GPP   P   P
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQG-PPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 649 ILXGPXXAPPPPXXGAXPPFXXGPXPKK 732
           I+ G    PP P     PP   GP   K
Sbjct: 330 IVLGDSDTPPKPAPPPPPPSSSGPDSAK 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,354
Number of Sequences: 438
Number of extensions: 3649
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)