Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N24
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    64   2e-11
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    39   8e-04
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.67 
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    29   0.88 
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    26   6.2  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   8.2  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   8.2  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +3

Query: 153 YXAIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQK 332
           Y A+   F Q YY  FD  + R+ L ++Y  E S ++FEG QLQG   I+EKL SL FQ+
Sbjct: 4   YNALATQFTQFYYQTFD--SDRSQLSSLYR-EESMLSFEGAQLQGTKAIVEKLVSLPFQR 60

Query: 333 ITRIVTAVDSQPM-FDGGVLINVLGKI 410
           +   ++ +D+QP    G V++ V G++
Sbjct: 61  VQHRISTLDAQPTGTTGSVIVMVTGEL 87



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 391 LMSLGRLKCDEDP-PHLYMQTFVLKPLGDSFYVQHDIFRL 507
           +M  G L  DE+     Y Q F L     ++YV +D+FRL
Sbjct: 81  VMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = +3

Query: 162 IGKGFVQQYYTLFDXPAQRANLVNMYNVETSFM---TFEGVQL-QGAVKIMEKLNSLTFQ 329
           IG  FVQ+YYT  +    R +    Y  +++ +     E + L  G  +I  K+  L FQ
Sbjct: 18  IGWMFVQEYYTYLNKEPNRLHC--FYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQ 75

Query: 330 KITRIVTAVDSQPMFDGGVLINVLGKI 410
               +++ VDS    +GG++I VLG++
Sbjct: 76  NCKVLISNVDSLASSNGGIVIQVLGEM 102


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 496 CRAEHKMNLRVASTRRF--ACTDVEDLRHTSIFPRTLIKTPPSNIG 365
           CR+ ++  L  AST      C +    R   I P T+IK+P S IG
Sbjct: 351 CRSSNRFRLFPASTPNSNGLCRNDSKCRFLMILPETIIKSPSSFIG 396


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 599 RILDIWYTLYFSCIISSKNL 658
           +ILDIWY L ++C + ++NL
Sbjct: 238 QILDIWYLLGWNCYVEAQNL 257


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 747 KPNSHFRLPCSITKFDHYHN 688
           KPN  F +PC+ITK     N
Sbjct: 157 KPNLEFLMPCTITKLSKGEN 176


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
 Frame = -1

Query: 515 WMPKRKMSC*T*NESPSGFNTKVCMYRCGGSSSHFNLPKDI--N*NASIKHWLGIH-GSY 345
           W  + K  C +   SP G N+ + +YR    +  F++P          ++  + IH    
Sbjct: 383 WSRRYKEFCYSLGYSPEGTNSSLIVYRWPQLTKVFDIPSAAIDGWGQDLRTIMAIHTHRK 442

Query: 344 YSSDFLKSQTI*FFHNFNSTLQLYSLKGHE 255
           YS++  +        N + T++ Y + G+E
Sbjct: 443 YSNNTWEEGEYVVVANSDETVKFYKIWGNE 472


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 312 NSLTFQKITRIVTAVDSQPMFDGGVLINVLGKIE 413
           N + F+KI    +A     + DGG L+   G I+
Sbjct: 330 NGIAFEKILNEYSASSLNSVQDGGALVEYFGNID 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,617
Number of Sequences: 5004
Number of extensions: 67292
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)