Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N24
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0963 + 33441731-33442096,33442175-33442270                       59   5e-09
08_02_1376 - 26528208-26528279,26529690-26529986                       58   7e-09
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    34   0.17 
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    31   1.2  
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    29   6.6  
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028...    28   8.7  

>01_06_0963 + 33441731-33442096,33442175-33442270
          Length = 153

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +3

Query: 150 QYXAIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQ 329
           Q   + + FV+ YY  FD    RA L  +Y  +TS ++FEG  + GA +I  KL  L F+
Sbjct: 24  QCDVVARAFVEYYYQTFD--TNRAALAALYG-QTSMLSFEGHMVAGAEEIGRKLLGLPFE 80

Query: 330 KITRIVTAVDSQPM--FDGGVLINVLGKIEV 416
           +    V  VD QP   F GG+L+ V G +++
Sbjct: 81  QCRHAVCTVDCQPTPSFPGGILVFVSGNLQL 111


>08_02_1376 - 26528208-26528279,26529690-26529986
          Length = 122

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +3

Query: 159 AIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKIT 338
           A+ K FV+ YY  FD    R  LV++Y  + S +TFEG Q  GA  I  KL SL F +  
Sbjct: 5   AVAKAFVEHYYRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQCH 61

Query: 339 RIVTAVDSQPMF-DGGVLINVLGKI 410
             +  VD QP    GG+L+ V G +
Sbjct: 62  HDINTVDCQPSGPQGGMLVFVSGSL 86



 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 421 EDPPHLYMQTFVLKPLGDSFYVQHDIFRL 507
           ++ P  + Q F L P G +FYVQ+D+FRL
Sbjct: 91  DEHPLKFSQMFQLLPAGGNFYVQNDMFRL 119


>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
 Frame = +3

Query: 144 NPQYXAIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQG---AVKIMEKLN 314
           +P    +G  FVQQYY +     Q  +LV  +  + S +        G   +V  ME +N
Sbjct: 9   SPSAQVVGNAFVQQYYQILH---QSPDLVYRFYQDASRLGRPPADRYGDMVSVTTMEAIN 65

Query: 315 -SLTFQKITRI-VTAVDSQPMFDGGVLINVLGKIEV 416
             +    ++R  +  VDSQ    GGV + V G + V
Sbjct: 66  EKIMAMDMSRAEIKTVDSQESLGGGVTVLVTGHLTV 101


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
 Frame = +3

Query: 147 PQYXAIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFM---TFEGVQLQGAVKIMEKLNS 317
           P    +G  FV QYY +     Q  +LV+ +  + S +             V  ME +N+
Sbjct: 18  PSAQVVGNAFVHQYYNILH---QSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINA 74

Query: 318 -LTFQKITRI-VTAVDSQPMFDGGVLINVLGKI 410
            +    I R  + AVD+Q    GGV + V G +
Sbjct: 75  KIVSMDIVRAEIKAVDAQESLGGGVTVLVTGHL 107


>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 526 KLCHGCLNGKCRAEHKMNLRVASTRRFA-CTDVEDLRHTS 410
           +LCHGC  G  R E +  +R+AS R  A C D  + R  S
Sbjct: 102 ELCHGCAVGLMRDEDE-GVRLASVRLIALCADKLNTREGS 140


>07_03_1180 -
           24601631-24602142,24602518-24602581,24602811-24602876,
           24602949-24603070,24603170-24603344,24603466-24603701,
           24603781-24604129,24605009-24605146,24605242-24605289
          Length = 569

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = +3

Query: 141 LNPQYXAIGKGFVQQYY-TLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLN- 314
           L+PQ   IG  FVQQYY  L   P Q   +   Y+  ++    +      +V  +  +N 
Sbjct: 12  LSPQM--IGNAFVQQYYNVLHSSPGQ---VCKFYHDSSTLGRPDSNGTMTSVTTLTAIND 66

Query: 315 ---SLTFQKITRIVTAVDSQPMFDGGVLINVLGKI 410
              S  F      +  VD+Q   +GGV I V G I
Sbjct: 67  EFLSTDFSSCLIKLENVDAQLSLNGGVHILVTGSI 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,707,516
Number of Sequences: 37544
Number of extensions: 388619
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)