Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N24
         (884 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   1e-13
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  37   0.019
SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_40135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 33/92 (35%), Positives = 62/92 (67%)
 Frame = +3

Query: 141 LNPQYXAIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSL 320
           ++  +  + K FV+ YY++FD  + R NL  +Y    S +TFEG Q+QG   I+ KL S+
Sbjct: 113 MSQPFEQVAKQFVEYYYSVFD--SNRNNLAPLYQ-PGSMLTFEGAQIQGTEAIVAKLVSM 169

Query: 321 TFQKITRIVTAVDSQPMFDGGVLINVLGKIEV 416
            FQ++  ++T+ D+QP+ +GG+++ V+G++++
Sbjct: 170 PFQQVLHVITSQDAQPLPNGGIIVFVMGQLKL 201


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
 Frame = +3

Query: 147 PQYXAIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFM---TFEGVQ---LQGAVKIMEK 308
           P    +G+ FV+QYYTL +   +   L   Y   + F+      G Q   + G   I EK
Sbjct: 6   PSPQCVGREFVRQYYTLLNQ--EPLKLHRFYTKHSWFLHGRAENGPQENPIMGQEAIYEK 63

Query: 309 LNSLTFQKITRIVTAVDSQPMFDGGVLINVLGKI 410
           +  L F      +  VDS      GV++ V G++
Sbjct: 64  IKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGEL 97



 Score = 32.3 bits (70), Expect = 0.54
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 403 GRLKCDEDPPHLYMQTFVLKPLGD--SFYVQHDIFR 504
           G L  +  P   +MQTFVL P  D   +YV +DIFR
Sbjct: 95  GELSNNGQPMRKFMQTFVLAPGEDIRKYYVHNDIFR 130


>SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 153 YXAIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEG-VQLQGAVKIMEKLNSLTFQ 329
           Y  I + F+Q  Y +   P +     N  N  TSF   +G  Q      ++  +++ TF 
Sbjct: 171 YGVIIRSFLQLVYLVLRVPCRSLQFTNASNKYTSFGQIQGDAQPSERQSLLRSISNQTFY 230

Query: 330 KITRIVT 350
             T+ V+
Sbjct: 231 SSTQCVS 237


>SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 181 NNITHCSMXRLNGQILLICTMLKLHS*PLREYNCRVLL 294
           N + H +M   +G   L CT+++ H       NCR LL
Sbjct: 315 NGVLHTAMLNHDGGFELQCTLVRTHPNSSNIVNCRFLL 352


>SB_40135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 668 FNFINSLTK*YKKNIMCTKCQEF*FNSCMLYQ 573
           F +I S+ K Y K   C++CQ+   N   LYQ
Sbjct: 47  FYYIESMAK-YSKTFACSRCQKLWKNRFSLYQ 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,912,204
Number of Sequences: 59808
Number of extensions: 486285
Number of successful extensions: 731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)