Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N24
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...    89   4e-18
Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical pr...    30   2.5  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = +3

Query: 135 MALNPQYXAIGKGFVQQYYTLFDXP---AQRANLVNMYNVETSFMTFEGVQLQGAVKIME 305
           M+ NP Y ++ K F+Q YY+ FD     ++   L ++Y+ E S+MTFEG Q +G   I++
Sbjct: 1   MSFNPDYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQ 60

Query: 306 KLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGKIE 413
           K  +L F KI R +T +DSQP++DG + + VLG+++
Sbjct: 61  KFTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLK 96



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
 Frame = +1

Query: 391 LMSLGRLKCDEDPPHLYMQTFVLKPLGD-SFYVQHDIFRLGIH 516
           +M LG+LK DEDP + + Q F+L+P    S+++ ++IFRL +H
Sbjct: 89  VMVLGQLKTDEDPINPFSQVFILRPNNQGSYFIGNEIFRLDLH 131


>Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical
           protein C15H11.3 protein.
          Length = 628

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 144 NPQYXAIGKGFVQQYYTLFDXP---AQRANLVNMYNVETSFMTFEGVQLQGA 290
           NPQ   + + FV  Y+  +D P     R NL N Y+ + S  +     L+G+
Sbjct: 359 NPQIRVLVEQFVTSYFDFYDGPDGQRTRRNLHNAYDADASTFSLTIEHLRGS 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,948,032
Number of Sequences: 27780
Number of extensions: 384946
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)