Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N24
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.93 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   8.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 321 TFQKITRIVTAVDSQPMFDGGVLINVLGKIEV*RRSSTSVHANLR 455
           T +     VT V+S+P    G+  +VL K+++ R+    +  NLR
Sbjct: 107 TIENFKGTVTHVESRPSKKEGLQFDVLVKVDMTRQYLLQLIRNLR 151


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 177 VQQYYTLFDXPAQRANLVNMYNVET 251
           + Q YT FD         N+Y VET
Sbjct: 440 LNQLYTAFDVLTDPKKNPNVYKVET 464


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 177 VQQYYTLFDXPAQRANLVNMYNVET 251
           + Q YT FD         N+Y VET
Sbjct: 440 LNQLYTAFDVLTDPKKNPNVYKVET 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,242
Number of Sequences: 438
Number of extensions: 5221
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)