Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N24
(884 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2), puta... 69 5e-12
At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2), puta... 63 2e-10
At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2), puta... 59 4e-09
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 40 0.002
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 40 0.002
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 33 0.19
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 31 1.0
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 29 3.1
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 29 3.1
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 29 4.1
At5g12960.1 68418.m01486 expressed protein 29 5.4
>At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 122
Score = 68.5 bits (160), Expect = 5e-12
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +3
Query: 159 AIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKIT 338
A+ K FV+ YY+ FD A R LV++Y E S +TFEG ++QG+ I+ KL L FQ+
Sbjct: 5 AVAKAFVEHYYSTFD--ANRPGLVSLYQ-EGSMLTFEGQKIQGSQNIVAKLTGLPFQQCK 61
Query: 339 RIVTAVDSQPMFD-GGVLINVLGKIEV 416
+T VD QP GG+L+ V G +++
Sbjct: 62 HNITTVDCQPSGPAGGMLVFVSGNLQL 88
>At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 126
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +3
Query: 159 AIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKIT 338
A+ K FV+ YY+ FD R L +Y E S +TFEG ++QG I+ KL SL FQ+
Sbjct: 8 AVSKAFVEHYYSTFD--TNRVGLAGLYQ-EASMLTFEGQKIQGVQSIVAKLTSLPFQQCK 64
Query: 339 RIVTAVDSQPMFD-GGVLINVLGKIEV 416
++ VD QP G+L+ V G +++
Sbjct: 65 HHISTVDCQPSGPASGMLVFVSGNLQL 91
>At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 127
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Frame = +3
Query: 162 IGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITR 341
+ FV YY LFD R++L ++YN TS +TFEG + G I KL L F +
Sbjct: 12 VASAFVNHYYHLFDN--DRSSLSSLYN-PTSLLTFEGQTIYGVDNISNKLKQLPFDQCHH 68
Query: 342 IVTAVDSQPMF----DGGVLINVLGKIEV 416
+++ VDSQP GG+L+ V G I++
Sbjct: 69 LISTVDSQPSSMAGGCGGILVFVSGSIQL 97
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +3
Query: 144 NPQYXAIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVK-------IM 302
+P +G+ FV+QYY + Q LV+ + ++SF+T V GAV I
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLTRPDVT--GAVTTVTTMQAIN 63
Query: 303 EKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGKI 410
+K+ SL ++ T + D+Q + GV++ V G++
Sbjct: 64 DKILSLKYEDYTAEIETADAQESHERGVIVLVTGRL 99
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Frame = +3
Query: 144 NPQYXAIGKGFVQQYYTLFDXPAQRANLVNMYNVETSFMTFEGVQLQGAVK-------IM 302
+P +G+ FV+QYY + Q LV+ + ++SF+T V GAV I
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLTRPDVT--GAVTTVTTMQAIN 63
Query: 303 EKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGKI 410
+K+ SL ++ T + D+Q + GV++ V G++
Sbjct: 64 DKILSLKYEDYTAEIETADAQESHERGVIVLVTGRL 99
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 33.5 bits (73), Expect = 0.19
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Frame = +3
Query: 138 ALNPQYXAIGKGFVQQYYT-LFDXPAQRANLVNMYNVETSFMTFEG-----VQLQGAVKI 299
+++PQ+ +G GFVQ+YY L+D ++ V+ + +E S ++ G V ++ I
Sbjct: 9 SVDPQF--VGNGFVQEYYNHLYDSTSE----VHKFYLEDSMISRPGLDGEIVTIKSLKGI 62
Query: 300 MEKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGKI 410
+++ S+ ++ + DSQ GV+ V G +
Sbjct: 63 NDQIMSIDYKSSRIEILTADSQSTLKNGVVTLVTGLV 99
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 31.1 bits (67), Expect = 1.0
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Frame = +3
Query: 162 IGKGFVQQYYTLF-DXPAQ---------RANLVNMYNVETSFMTFEGVQLQGAVKIMEKL 311
+G FV QYY +F + P R V V F TF+G+ E+L
Sbjct: 16 VGSAFVNQYYYIFCNMPEHLPRFYQEISRVGRVGQDGVMRDFSTFQGIS--------EEL 67
Query: 312 NSLTFQKITRI-VTAVDSQPMFDGGVLINVLGKIEV*RRS 428
LT+ +T+ D+Q +GG L+ V G + RS
Sbjct: 68 KRLTYGDCNSAEITSYDTQESHNGGFLLFVTGYFTLNERS 107
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 29.5 bits (63), Expect = 3.1
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +3
Query: 147 PQYXAIGKGFVQQYY-TLFDXP--AQR----ANLVNMYNVETSFMTFEGVQLQGAVKIME 305
P I FV+QYY L P A+R A++V+ +V + M+F V+ I +
Sbjct: 8 PSAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEA-----INK 62
Query: 306 KLNSLTFQKITRIVTAVDSQPMFDGGVLINVLG 404
+ S F+ V +VDSQ + G+ I V+G
Sbjct: 63 HILSCDFENTKFEVLSVDSQNSLEDGIFIMVIG 95
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 29.5 bits (63), Expect = 3.1
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Frame = +3
Query: 147 PQYXAIGKGFVQQYY-TLFDXP--AQR----ANLVNMYNVETSFMTFEGVQLQGAVKIME 305
P I FV+QYY L P A+R A++V+ +V + M+F V+ I +
Sbjct: 8 PSAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEA-----INK 62
Query: 306 KLNSLTFQKITRIVTAVDSQPMFDGGVLINVLG 404
+ S F+ V +VDSQ + G+ I V+G
Sbjct: 63 HILSCDFENTKFEVLSVDSQNSLEDGIFIMVIG 95
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 29.1 bits (62), Expect = 4.1
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = +3
Query: 162 IGKGFVQQYYT-LFDXPAQRANLVNMYNVETSFMTFEG-----VQLQGAVKIMEKLNSLT 323
IG FV++YY L+ P+Q V+ + ++ S + G V ++ I E++ S
Sbjct: 15 IGNSFVEKYYNLLYKSPSQ----VHQFYLDDSVLGRPGSDGEMVSVKSLKAINEQIMSFD 70
Query: 324 FQKITRI-VTAVDSQPMFDGGVLINVLGKIEV 416
++ I++I + DSQ + GV+ V G + V
Sbjct: 71 YE-ISKIQILTADSQASYMNGVVTLVTGLLTV 101
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 403 GRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 504
G L E + Q+F L PL S++V +D+FR
Sbjct: 97 GLLTVKEGQRMRFSQSFFLVPLNGSYFVLNDVFR 130
>At5g12960.1 68418.m01486 expressed protein
Length = 865
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/76 (19%), Positives = 30/76 (39%)
Frame = -2
Query: 589 VVCYIKFQVKHLFVLCLSL*SKLCHGCLNGKCRAEHKMNLRVASTRRFACTDVEDLRHTS 410
++ Y F + L C + +KL L + NL+ + T +D ++
Sbjct: 16 LLLYTSFLLVCLAKECTDIPTKLSSHTLRSELLQSQNANLKSEEFSHYHLTPTDDSAWST 75
Query: 409 IFPRTLIKTPPSNIGW 362
+ PR ++K + W
Sbjct: 76 LLPRKMLKEETDDFAW 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,431,675
Number of Sequences: 28952
Number of extensions: 337954
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -