Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N22
(904 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 38 0.012
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 35 0.085
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 34 0.11
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 34 0.11
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 34 0.15
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 34 0.15
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 34 0.15
At1g61080.1 68414.m06877 proline-rich family protein 34 0.15
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 33 0.20
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 32 0.60
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 29 3.2
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 29 4.2
At4g33660.1 68417.m04781 expressed protein 29 4.2
At5g67600.1 68418.m08524 expressed protein 29 5.6
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 5.6
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 29 5.6
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 28 7.4
At4g03120.1 68417.m00425 proline-rich family protein similar to ... 28 7.4
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 28 7.4
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 28 9.7
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 37.5 bits (83), Expect = 0.012
Identities = 29/112 (25%), Positives = 33/112 (29%), Gaps = 4/112 (3%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXP-EKKXKXKGG--- 396
PPP P P + G G P P P + + P PPP P + G
Sbjct: 619 PPPPPPPPSFGSTGNKRQAQPPPPPPPPPPTRIPAAKCAPPPPPPPPTSHSGSIRVGPPS 678
Query: 395 XKXXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPP 240
P P P P GAPPP P PPP
Sbjct: 679 TPPPPPPPPPKANISNAPKPPAPPPLPPSSTRLGAPPPPPPPPLSKTPAPPP 730
Score = 37.5 bits (83), Expect = 0.012
Identities = 30/116 (25%), Positives = 32/116 (27%), Gaps = 6/116 (5%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGG---GVFLSGXXXPXPPPXPEKKXKXKGGX 393
PPP P P P G GP P P + P PPP P +
Sbjct: 658 PPPPPPP--PTSHSGSIRVGPPSTPPPPPPPPPKANISNAPKPPAPPPLPPSSTRLGAPP 715
Query: 392 KXXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGA---PPPXGXFPXXGPXXPPPKG 234
P P P P G PPP G P PPP G
Sbjct: 716 PPPPPPLSKTPAPPPPPLSKTPVPPPPPGLGRGTSSGPPPLGAKGSNAPPPPPPAG 771
Score = 34.7 bits (76), Expect = 0.085
Identities = 27/110 (24%), Positives = 29/110 (26%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PPP P P P P G + + P PPP P K K
Sbjct: 640 PPPPPPPPPTRIPAAKCAPPPPPPPPTSHSGSIRVGPPSTPPPPPPPPPKANISNAPKPP 699
Query: 383 XPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKG 234
P P P APPP P PPP G
Sbjct: 700 APPPLPPSSTRLGAPPPPP---PPPLSKTPAPPPPPL--SKTPVPPPPPG 744
Score = 29.5 bits (63), Expect = 3.2
Identities = 30/122 (24%), Positives = 32/122 (26%), Gaps = 8/122 (6%)
Frame = -3
Query: 560 PPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLS----GXXXPXPPPXPEKKXKXKGGX 393
PP P P P P P P +F+S P PPP P
Sbjct: 482 PPPPPPPPPPLFTSTTSFSPSQPPPPPPPPPLFMSTTSFSPSQPPPPPPPPPLFTSTTSF 541
Query: 392 KXXXPXXKGAQQXPXXPXF----PXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXP 225
P P P F P P PPP P PPP P
Sbjct: 542 SPSQP-----PPPPPLPSFSNRDPLTTLHQPINKTPPPPPPPPP-PLPSRSIPPPLAQPP 595
Query: 224 XP 219
P
Sbjct: 596 PP 597
Score = 28.7 bits (61), Expect = 5.6
Identities = 27/116 (23%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PPP P P P P P + P PPP P G +
Sbjct: 579 PPPLPSRSIPPPLAQPPPPRPPPPPPPPPSSR-SIPSPSAPPPPPPPPPSFGSTGNKRQA 637
Query: 383 XPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPP---XGXFPXXGPXXPPPKGGXP 225
P P P P + PPP G P PPP P
Sbjct: 638 QP------PPPPPPPPPTRIPAAKCAPPPPPPPPTSHSGSIRVGPPSTPPPPPPPP 687
>At5g58160.1 68418.m07280 formin homology 2 domain-containing protein
/ FH2 domain-containing protein low similarity to
SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 34.7 bits (76), Expect = 0.085
Identities = 27/112 (24%), Positives = 29/112 (25%), Gaps = 1/112 (0%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
P P P P P P P P + P PPP P
Sbjct: 687 PRPPPPPPPPPMQHSTVTKVPPPPPPAPPAPPTPIVHTSSPPPPPPPPPPPAPPTPQSNG 746
Query: 383 XPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXF-PXXGPXXPPPKGG 231
K + P P P PPP G P PPPK G
Sbjct: 747 ISAMKSSPPAPPAPPRLPTHSASPPPPTAPPPPPLGQTRAPSAPPPPPPKLG 798
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPP--PXPEKKXKXKGGXK 390
PPP P P AP K P P + P PP P P + +
Sbjct: 730 PPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPPPTAPPPPPLGQTRAPSA 789
Query: 389 XXXPXXK-GAQQXPXXPXFP 333
P K G + P P P
Sbjct: 790 PPPPPPKLGTKLSPSGPNVP 809
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 34.3 bits (75), Expect = 0.11
Identities = 29/117 (24%), Positives = 30/117 (25%), Gaps = 4/117 (3%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PPP P P P P P P V+ P PPP P
Sbjct: 438 PPPPPPPPPP-------VYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPP 490
Query: 383 XPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFP----XXGPXXPPPKGGXP 225
P P P P P PPP P P PPP P
Sbjct: 491 PPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSPPP 547
Score = 32.3 bits (70), Expect = 0.45
Identities = 31/117 (26%), Positives = 32/117 (27%), Gaps = 2/117 (1%)
Frame = -3
Query: 563 PP--PXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXK 390
PP P P P AP P P P V+ P PPP P
Sbjct: 404 PPSLPSPPPPAPIFSTPPTLTSPPPPSPPPP---VY---SPPPPPPPPPPVYSPPPPPPP 457
Query: 389 XXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P P P P P PPP P P PPP P P
Sbjct: 458 PPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPP 514
Score = 29.1 bits (62), Expect = 4.2
Identities = 26/115 (22%), Positives = 28/115 (24%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PP P P P P P + P PPP P
Sbjct: 420 PPTLTSPPPPSPPPPVYSPPPPPPPPPP------VYSPPPPPPPPPPPPVYSPPPPPPPP 473
Query: 383 XPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P P P P + P PPP P P PP P P
Sbjct: 474 PPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPP----PVYSPPPPPVYSSPPPP 524
Score = 29.1 bits (62), Expect = 4.2
Identities = 28/121 (23%), Positives = 34/121 (28%), Gaps = 6/121 (4%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPX--PXGGGVFLSGXXXPXPPPXPEKKXKXKGGXK 390
PPP P P P P P P V+ S P P P P +
Sbjct: 483 PPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPP 542
Query: 389 XXXPXXKGAQQXPXXPXF--PXKXXFXPXXXXGGAP--PPXGXFPXXGPXXPPPKGGXPX 222
P + + P + P P P PP +P P PP P
Sbjct: 543 HSPPPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPPPIYPYLSPPPPPTPVSSPP 602
Query: 221 P 219
P
Sbjct: 603 P 603
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 34.3 bits (75), Expect = 0.11
Identities = 30/116 (25%), Positives = 30/116 (25%), Gaps = 1/116 (0%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKX-KGGXKX 387
P P PKP AP GP K P G S P P P P
Sbjct: 6 PDPSPKPVAP--------PGPSSKPVAPPGPSPCPSPPPKPQPKPPPAPSPSPCPSPPPK 57
Query: 386 XXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P P P P P PP P P PP P P
Sbjct: 58 PQPKPVPPPACPPTPPKPQPKPAPPPEPKPAPPPAPKPVPCPSPPKPPAPTPKPVP 113
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/82 (31%), Positives = 26/82 (31%)
Frame = -3
Query: 470 GVFLSGXXXPXPPPXPEKKXKXKGGXKXXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGA 291
G SG P PP P K K P A Q P P P GG
Sbjct: 342 GKSFSGKVEPLPPEPP-KFLKVSSKKASAPPPPVPAPQMPSSAGPPRPPPPAPPPGSGGP 400
Query: 290 PPPXGXFPXXGPXXPPPKGGXP 225
PP P GP PPP P
Sbjct: 401 KPPPPPGP-KGPRPPPPMSLGP 421
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPE 420
PPP P P P G P+ P P G SG P PPP P+
Sbjct: 371 PPPVPAPQMPSSAG-----PPRPPPPAPPPG----SGGPKPPPPPGPK 409
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/82 (31%), Positives = 26/82 (31%)
Frame = -3
Query: 470 GVFLSGXXXPXPPPXPEKKXKXKGGXKXXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGA 291
G SG P PP P K K P A Q P P P GG
Sbjct: 342 GKSFSGKVEPLPPEPP-KFLKVSSKKASAPPPPVPAPQMPSSAGPPRPPPPAPPPGSGGP 400
Query: 290 PPPXGXFPXXGPXXPPPKGGXP 225
PP P GP PPP P
Sbjct: 401 KPPPPPGP-KGPRPPPPMSLGP 421
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPE 420
PPP P P P G P+ P P G SG P PPP P+
Sbjct: 371 PPPVPAPQMPSSAG-----PPRPPPPAPPPG----SGGPKPPPPPGPK 409
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -3
Query: 299 GGAPPPXGXFPXXGPXXPPPKGGXPXP 219
GG PPP P GP PPP GG P P
Sbjct: 676 GGGPPPPPPPPGGGP--PPPPGGGPPP 700
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PP P+P GG P + P P GG P PPP GG
Sbjct: 648 PPRVPRPPPRSAGGGKSTNLPSARPPLPGGG-------PPPPPPPPGGGPPPPPGGGPPP 700
Query: 383 XPXXKGA 363
P GA
Sbjct: 701 PPPPPGA 707
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/69 (30%), Positives = 22/69 (31%)
Frame = -3
Query: 437 PPPXPEKKXKXKGGXKXXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXG 258
PP P + GG K P P P GG PPP P G
Sbjct: 648 PPRVPRPPPRSAGGGK-------STNLPSARPPLPGGGPPPPPPPPGGGPPPP---PGGG 697
Query: 257 PXXPPPKGG 231
P PPP G
Sbjct: 698 PPPPPPPPG 706
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = -3
Query: 557 PXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGG 396
P +P PG GP P P GG G P PPP P + GG
Sbjct: 668 PSARPPLPGG-------GPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGG 714
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 33.9 bits (74), Expect = 0.15
Identities = 28/110 (25%), Positives = 30/110 (27%), Gaps = 2/110 (1%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PPP P P P P P + +S P PPP P K
Sbjct: 417 PPPPPPPPPPLSFIKTASLPLPSPPPTPPIADIAISMPPPPPPPPPPPAVMPLKHFAPPP 476
Query: 383 XPXXKGAQQX--PXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPP 240
P A P P F P PPP P PPP
Sbjct: 477 PPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPP 526
Score = 33.5 bits (73), Expect = 0.20
Identities = 30/115 (26%), Positives = 32/115 (27%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PPP P P P P P P + L P P P K K
Sbjct: 454 PPPPPPPPPPPAVMPLKHFAPPPPPPLPPAV-MPLKHFAPPPPTPPAFKPLKGSAPPPPP 512
Query: 383 XPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P P P P + P PPP G P PPP G P
Sbjct: 513 PPPLPTTIAAPPPPPPPPRAAVAPPPP----PPPPGTAAAP-PPPPPPPGTQAAP 562
Score = 29.1 bits (62), Expect = 4.2
Identities = 25/108 (23%), Positives = 27/108 (25%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PPP P P P P + G PPP P +
Sbjct: 508 PPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPP 567
Query: 383 XPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPP 240
P A P P GG PPP P PPP
Sbjct: 568 PPMQNRAPSPPPMPM--------GNSGSGGPPPPPPPMPLANGATPPP 607
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 33.5 bits (73), Expect = 0.20
Identities = 29/116 (25%), Positives = 31/116 (26%), Gaps = 1/116 (0%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PPP P P PG GP P P P P P P+ G
Sbjct: 176 PPPSPSP-TPGPDSPLPSPGPDSPLPLP-------GPPPSPSPTPGPDSPLPSPGPDSPL 227
Query: 383 X-PXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P + P P P P P P GP P P G P
Sbjct: 228 PLPGPPPSSSPTPGPDSPLPSP-GPPPSPSPTPGPDSPLPSPGPDSPLPSPGPDPP 282
Score = 30.7 bits (66), Expect = 1.4
Identities = 26/113 (23%), Positives = 28/113 (24%), Gaps = 2/113 (1%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGP--KXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXK 390
PPP PG GP P P G P P P P+ G
Sbjct: 175 PPPPSPSPTPGPDSPLPSPGPDSPLPLPGPPPSPSPTPGPDSPLPSPGPDSPLPLPGPPP 234
Query: 389 XXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGG 231
P P P +P P P GP P P G
Sbjct: 235 SSSPTPGPDSPLPSPGPPPSPSPTPGPDSPLPSPGPDSPLPSPGPDPPLPSPG 287
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 31.9 bits (69), Expect = 0.60
Identities = 31/114 (27%), Positives = 33/114 (28%)
Frame = -3
Query: 560 PPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXXX 381
PP P P GG P P + G PPP GG +
Sbjct: 246 PPMGGPPPPPHIGGSAPPPPHMGGSAPPPPHM---GQNYGPPPP------NNMGGPRHPP 296
Query: 380 PXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P Q P P P GGAPP G PP GG P P
Sbjct: 297 PYGAPPQNNMGGPRPPQNYGGTPPPNYGGAPPANN----MGGAPPPNYGGGPPP 346
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 29.5 bits (63), Expect = 3.2
Identities = 30/115 (26%), Positives = 30/115 (26%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPPPXPEKKXKXKGGXKXX 384
PP P P G GP P P G G PPP G
Sbjct: 173 PPMGPGMSMPPPSG--MPGGPLSNGPPPSG---MHGGHLSNGPPPSGMPGGPLSNGPP-- 225
Query: 383 XPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P G P F P G PP G F P PP P P
Sbjct: 226 -PPMMGPGAFPRGSQFTSGPMMAPPPPYG-QPPNAGPFTGNSPLSSPPAHSIPPP 278
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 314 PXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P GG PPP G P PP GG P
Sbjct: 166 PFAGQGGPPPPYGMRPPYPGPPPPQYGGQQRP 197
>At4g33660.1 68417.m04781 expressed protein
Length = 76
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 314 PXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P G PPP G P P PPP P P
Sbjct: 13 PGNYPQGPPPPVGVPPQYYPPPPPPPPPPPPP 44
>At5g67600.1 68418.m08524 expressed protein
Length = 82
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = -3
Query: 296 GAPPPXGXFPXXG-PXXPPPKGGXPXPG 216
GAPPP G P G P P G P PG
Sbjct: 10 GAPPPQGYPPKDGYPPAGYPPAGYPPPG 37
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.7 bits (61), Expect = 5.6
Identities = 27/118 (22%), Positives = 28/118 (23%), Gaps = 2/118 (1%)
Frame = -3
Query: 563 PPPXPKPXAPGXXGGXXXXGPKXKXPXPXGGGVFLSGXXXPXPP-PXPEKKXKXKGGXKX 387
PP P +PG P P S P P P P
Sbjct: 507 PPSSPTTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTPSSPIPSPPTPST 566
Query: 386 XX-PXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXPG 216
P G P P P P PP P GP P P PG
Sbjct: 567 PPTPISPGQNSPPIIPSPPFTGPSPPSSPSPPLPPVIPSPPIVGPTPSSPPPSTPTPG 624
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/83 (22%), Positives = 25/83 (30%)
Frame = -3
Query: 467 VFLSGXXXPXPPPXPEKKXKXKGGXKXXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAP 288
+ + G PPP P + + + P P P P P P
Sbjct: 36 IIIGGGNDNNPPPSPSPEPEPEPADCPPPPPPPPCPPPPSPPPCPPPPSPPPSPPPPQLP 95
Query: 287 PPXGXFPXXGPXXPPPKGGXPXP 219
PP P P P P+ P P
Sbjct: 96 PPPQLPP---PAPPKPQPSPPTP 115
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/65 (24%), Positives = 18/65 (27%)
Frame = -3
Query: 434 PPXPEKKXKXKGGXKXXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGP 255
PP P++ P P P F P PPP P P
Sbjct: 1062 PPLPQESPPPLPPLPPSPPPPSPPLPPSSLPPPPPAALFPPLPPPPSQPPPPPLSPPPSP 1121
Query: 254 XXPPP 240
PPP
Sbjct: 1122 PPPPP 1126
>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
small nuclear ribonucleoprotein C; contains proline rich
extensin domains, INTERPRO:IPR002965
Length = 207
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -3
Query: 314 PXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P GG PP P G PP G P P
Sbjct: 142 PIPGQGGGPPGMAPIPGQGGGPPPNYNGLPPP 173
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/73 (26%), Positives = 21/73 (28%)
Frame = -3
Query: 443 PXPPPXPEKKXKXKGGXKXXXPXXKGAQQXPXXPXFPXKXXFXPXXXXGGAPPPXGXFPX 264
P PPP P + P + P P F P PPP P
Sbjct: 43 PSPPPSPSSPPRLPPPFPALFPP-----EPPLPPRFELPPPLFPPPPLPRLPPPLLPPPE 97
Query: 263 XGPXXPPPKGGXP 225
P PPP P
Sbjct: 98 EPPREPPPPPPPP 110
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/45 (28%), Positives = 13/45 (28%)
Frame = -3
Query: 353 PXXPXFPXKXXFXPXXXXGGAPPPXGXFPXXGPXXPPPKGGXPXP 219
P P P P PPP P P PP P P
Sbjct: 49 PALPSLPPAVFSPPPTVSSPPPPPLDSSPPPPPDLTPPPSSPPPP 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,892,387
Number of Sequences: 28952
Number of extensions: 176543
Number of successful extensions: 894
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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