Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N21
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +3

Query: 651 QKXXXPPPPP---NXXXTPKXXGGXFXXXPPPPP 743
           +K   PPPPP   N    P   G      PPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 520 PPPXXGGGGXFXXGKXPPPPPP 455
           PPP     G    G  PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +2

Query: 647 PPKXXFXPXPAQXPXNXKAXRGXLXXXPPPPP 742
           PP     P PA  P         +   PPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +3

Query: 645 PPQKXXXPPPPPNXXXTPKXXGGXFXXXPPPPP 743
           PP      PPPP     P   G      PPPPP
Sbjct: 753 PPAPIMGGPPPP--PPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 645 PPQKXXXPPPPPNXXXTPKXXGGXFXXXPPPPPXXXKKK 761
           PP     PPPPP      +         PPPPP   KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP-------PPPPPGYVKKR 36



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 520 PPPXXGGGGXFXXGKXPPPPPPXG 449
           PPP  G    F     PPPPPP G
Sbjct: 12  PPPPPG----FEPPSQPPPPPPPG 31



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 600 LPPGGXXXFSXXXGXPPQKXXXPPPPP 680
           LPPG         G  P     PPPPP
Sbjct: 4   LPPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 520 PPPXXGGGGXFXXGKXPPPPPP 455
           PPP     G     + PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
 Frame = +3

Query: 645  PPQKXXXPPPPPNXXXTPKXXGGXFXXXP---PPPPXXXKKKP 764
            PPQ     PPPP     P          P   PPPP      P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.152    0.537 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,397
Number of Sequences: 5004
Number of extensions: 20901
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)