Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N19
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 61 2e-10
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 51 3e-07
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 48 1e-06
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 47 3e-06
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 40 5e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.071
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 30 0.50
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 29 0.88
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 27 2.7
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 2.7
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 26 6.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 6.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.2
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 8.2
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 8.2
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 61.3 bits (142), Expect = 2e-10
Identities = 38/115 (33%), Positives = 62/115 (53%)
Frame = +1
Query: 352 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 531
Q E+T MR ++ EW++E+ + E LA++ +DRFLS + S+ QL G LL
Sbjct: 161 QKELTWKMREILNEWLVEIHSNFCLMPETLYLAVNIIDRFLSRRSCSLSKFQLTGITALL 220
Query: 532 LASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFL 696
+ASK E C V+ T + T+ D+C E +L+ L +D++ + +FL
Sbjct: 221 IASKYEEV-MCP-SIQNFVYMTDGAFTVEDVCVAERYMLNVLNFDLSYPSPLNFL 273
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 50.8 bits (116), Expect = 3e-07
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +1
Query: 310 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV 489
E + A NY +VQ EI R ++ +W+++V E LA++ +DRFLSI V
Sbjct: 175 ERKLAPPPNYM-SVQQEIDWVTRHMLVDWIVQVQIHFRLLPETLFLAVNLIDRFLSIKVV 233
Query: 490 GKSQVQLLGTACLLLASKLRE 552
+VQL+G + LL+A K E
Sbjct: 234 SLQKVQLVGLSALLIACKYEE 254
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +1
Query: 352 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 531
Q E+ MR ++ +W++EV E LA++ +DRFLS+ +++QL+G A L
Sbjct: 228 QKELAWKMRGILTDWLIEVHSRFRLLPETLFLAVNIIDRFLSLRVCSLNKLQLVGIAALF 287
Query: 532 LASKLRE 552
+ASK E
Sbjct: 288 IASKYEE 294
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 47.2 bits (107), Expect = 3e-06
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Frame = +1
Query: 307 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 486
T E+ + + Q E+ MR + +++E+ + PL+IS +D ++S
Sbjct: 106 TREKNFLLNVHLSNQQPELRWSMRPALVNFIVEIHNGFDLSIDTLPLSISLMDSYVSRRV 165
Query: 487 VGKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDL-CSWELLVLSKLKW 663
V +QL+ CL +ASK E +P + +I DL E +L L W
Sbjct: 166 VYCKHIQLVACVCLWIASKFHETED-RVPLLQELKLACKNIYAEDLFIRMERHILDTLDW 224
Query: 664 DVAGVTAHDFLPLL 705
D++ T ++P+L
Sbjct: 225 DISIPTPASYIPVL 238
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 39.9 bits (89), Expect = 5e-04
Identities = 35/120 (29%), Positives = 52/120 (43%)
Frame = +1
Query: 346 TVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTAC 525
+ Q MR V W++ V E L+I+ LDRFLS+ V S+++L G
Sbjct: 165 SAQPYYVTEMRASVINWIVGVHTCINLLPESLFLSINVLDRFLSLQNVPASKMKLCGATA 224
Query: 526 LLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLL 705
L +A K E + DL + I D+C E +L L++ + FL LL
Sbjct: 225 LFIACKYEEIHPPTV-KDLEIVLEGEWIG-EDICGMEKYMLMVLQYQLGWPGPVSFLRLL 282
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.7 bits (71), Expect = 0.071
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 539 PNSVSQDRVPSPPTYLSSTPQTASPLP 619
P S S +P PPT SST +SPLP
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLP 223
Score = 32.7 bits (71), Expect = 0.071
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 539 PNSVSQDRVPSPPTYLSSTPQTASPLP 619
P S S +P PPT SST +SPLP
Sbjct: 253 PTSTSSTSIPIPPTSTSSTDTNSSPLP 279
Score = 31.5 bits (68), Expect = 0.17
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 539 PNSVSQDRVPSPPTYLSSTPQTASPLP 619
P S S +P PPT SST ++PLP
Sbjct: 140 PTSTSSTSIPIPPTSTSSTDTNSNPLP 166
Score = 29.9 bits (64), Expect = 0.50
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 539 PNSVSQDRVPSPPTYLSSTPQTASPLP 619
P S S P PP SST ++SPLP
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLP 333
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 539 PNSVSQDRVPSPPTYLSSTPQTASPLPIFAAGSC 640
P S S P PP SST ++SPL + + SC
Sbjct: 361 PTSTSSTSTPPPPASTSSTGTSSSPL-LSTSTSC 393
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 29.9 bits (64), Expect = 0.50
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Frame = -2
Query: 746 ISTLTRPRIGNRDSRRGKKSCAVTPATSHFSFDSTSNSQLQRSVRVMLFAV*KTSRSAGR 567
+ ++ R + DSRRGK+ +++ A S S+S S RS + S S+
Sbjct: 60 VELISDERSDSSDSRRGKEDFSISTAEVTRSSLSSSRSTSSRSDKDSEKLYSNNSLSSSH 119
Query: 566 AHDPGSRSLEANSRQAVPKSCT*LFPTAQ------MLKNRSRNDIASGKTSSWQPRSSHT 405
+ L++ S+ +VP + +FP+++ +L N+ +D+++ T ++
Sbjct: 120 SSILNG-PLDSLSKPSVPSNFNSMFPSSKQEGPSPLLDNQPSSDLSNFNTIDADYNNASA 178
Query: 404 SSIHSATRRRM*GVIS 357
S+ AT + V+S
Sbjct: 179 STSAPATSASLKKVLS 194
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 29.1 bits (62), Expect = 0.88
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +1
Query: 361 ITPHMRRLVAEWMLEVCEDR-GCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLA 537
I PH L + + E ED C A S L +S GK +GT C+ +A
Sbjct: 295 IIPHENDLTVK-ITEKIEDLVNCLFLPLYFASSGLKTNISTLNTGKIWGYTIGTICVAIA 353
Query: 538 SKLREPGSCALPADLLVFYTANSITLTDLCSWELLV 645
SK+ GS L A +L ++S+ + L S + LV
Sbjct: 354 SKM---GSSMLAARILKMPWSDSLVVGSLMSCKGLV 386
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +1
Query: 544 LREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLL 705
LR LP L T NS+T LVL LK+D GV A D +L
Sbjct: 476 LRRQNEALLPNPWLFCVTVNSLTQ--------LVLKSLKYDTYGVVARDISSIL 521
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 75 NTTCNTPALAPDRSAVEHSAQNKSYPSRRVRDRSDKHGAVVR 200
N + T +AP ++ + + +YP+RR+ ++ K A+ R
Sbjct: 149 NASSYTTPMAPFTASFSNKVSHSAYPTRRLPSQAKKTSAIER 190
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +1
Query: 514 GTACLLLASKLREPGSCALP--ADLLVF---YTANSITLTDLCSWELLVLSKLKWDVAGV 678
GT C+LLA + R L D LV Y N + + + ++ S K DV+GV
Sbjct: 55 GTVCILLAGRFRGKRVVVLSQLEDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGV 114
Query: 679 TAHDF 693
+ F
Sbjct: 115 SVEKF 119
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 572 PPTYLSSTPQTASPLPIFAAGS 637
PPT L+STP +S LP + S
Sbjct: 105 PPTRLTSTPSNSSSLPSIPSSS 126
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 243 QPRCALATAGADAFRAQQLHVYPNGHVRVAKDMICSARS 127
+ RCAL TA D FR++ GH ++ I A S
Sbjct: 219 ESRCALHTAAKDPFRSKNSLRCNRGHSPLSSQQILPAIS 257
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 542 NSVSQDRVPSPPTYLSSTPQTASPLPI 622
N VS D P + STPQ AS LPI
Sbjct: 185 NVVSSDPKKYIPETVPSTPQPASSLPI 211
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 75 NTTCNTPALAPDRSAVEHSAQNKSYPSRRVRDRSDKHGAVVRGT 206
N+ +T + D +S QN ++ + +D H VVRG+
Sbjct: 319 NSNYSTTRVDNDPHVASYSPQNSNFDHQAAATTNDAHQNVVRGS 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,142
Number of Sequences: 5004
Number of extensions: 61359
Number of successful extensions: 212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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