Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N19
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   6e-37
SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   1e-12
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)                    63   3e-10
SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)               51   1e-06
SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)              42   5e-04
SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05)              36   0.058
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_32434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_28218| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score =  151 bits (367), Expect = 6e-37
 Identities = 73/136 (53%), Positives = 99/136 (72%)
 Frame = +1

Query: 373 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 552
           MR+LVA WMLEVCE+  C+EEVF L++++LDR LS+  V K Q+QLLG  C+ +ASK++E
Sbjct: 1   MRKLVATWMLEVCEEERCEEEVFALSMNYLDRILSLLPVKKFQLQLLGAVCMFIASKMKE 60

Query: 553 PGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLLLSRLPIRGL 732
             +  L A+ L  YT NSIT  +L  WELLVL KLKWDV+ VT HDFL  + SRLP+   
Sbjct: 61  --TSPLTAEKLCIYTDNSITTEELLDWELLVLGKLKWDVSAVTPHDFLDQIFSRLPL-DR 117

Query: 733 VNVEMVQRHAKTFISL 780
             ++++++HA TFI+L
Sbjct: 118 STLDVLRKHASTFIAL 133


>SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
 Frame = +1

Query: 352 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 531
           Q +I   MR ++ +W++EV E+     +   L ++++DRFLS  +V + ++QL+GTAC+L
Sbjct: 216 QPDINNSMRAILVDWLVEVAEEYKLLPQTLYLTVNYIDRFLSAMSVLRGKLQLVGTACML 275

Query: 532 LASKLREPGSCALPADL--LVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFL 696
           LASK  E      P ++   V+ T ++ T   +   E LVL  L +D++  T  +FL
Sbjct: 276 LASKFEE----IYPPEVSEFVYITDDTYTAKQVLKMEQLVLKVLTFDLSVPTILNFL 328


>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
          Length = 561

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 48/164 (29%), Positives = 76/164 (46%)
 Frame = +1

Query: 310 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV 489
           EE Y+V+  Y    Q E+   MR ++ +W+++V       +E   + +S +DRFL++  V
Sbjct: 157 EEHYSVSPTYMNN-QQEVNEKMRAILLDWLVQVHLKFRLLQETLYITMSIIDRFLAVHQV 215

Query: 490 GKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDV 669
            K ++QL+G   +LLASK  E    A      V+ T ++ T   +   E L+  KL + +
Sbjct: 216 SKRELQLVGVGAMLLASKYEE--MFAPEIGDFVYITDHAYTKKQIRQMESLIFRKLDFSL 273

Query: 670 AGVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYES 801
                  F    L R    G V  E     AK  + L   DY+S
Sbjct: 274 GKPLCLHF----LRRNSKAGAVGAE-EHTMAKYLMELTLIDYQS 312


>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
          Length = 279

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 33/117 (28%), Positives = 54/117 (46%)
 Frame = +1

Query: 373 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLLLASKLRE 552
           +RR + +W+  + E  G    V  LAI ++D F+    + +SQ+ LL    LLLA+K  E
Sbjct: 60  IRRYLVDWLAVIGEKLGSSHGVVHLAIYYMDFFMDKFIIQESQLHLLALTALLLAAKFDE 119

Query: 553 PGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLLLSRLPI 723
             +       L  +  N+    +    ELL+L    W++   T   FL   L++  I
Sbjct: 120 NENQIPDISTLNKFVNNTYQHAEYHQMELLLLEFFNWNIDLPTPVQFLEYYLAKATI 176


>SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)
          Length = 392

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = +1

Query: 352 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 531
           Q E+T  MR ++ +W++EV E      E   L +  LD +L    V +  +QL+G   L 
Sbjct: 202 QKELTISMRAILVDWLVEVQESFELYHETLYLGVRVLDNYLMRSYVERENLQLVGAVSLY 261

Query: 532 LASKL 546
           +A K+
Sbjct: 262 IACKV 266


>SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05)
          Length = 223

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +1

Query: 445 LAISFLDRFLSICAVGKSQVQLLGTACLLLASKLREPGS 561
           L ++ +DR++S+  V  +  QLLG ACLL+A K  +  S
Sbjct: 82  LIVALVDRYMSLRTVPVAHFQLLGMACLLVACKYEDRAS 120


>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 346 TVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSI 480
           T   EITP +      W+  + +D     + F L IS L+RFLS+
Sbjct: 40  TEGNEITPSIYSNTTRWIWLLNQDFEYLPDTFSLTISLLNRFLSL 84


>SB_5466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 496

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 267 RVGCSSLRQPRCALATAGADAFRAQQLHVYPNGHVRVA 154
           + G +S+  P CA ATA + A ++   H  P GHV ++
Sbjct: 243 KAGKNSVILPNCATATAASKAPKSTTAHA-PEGHVMIS 279


>SB_32434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 515 PKSCT*LFPTAQMLKNRSRNDIASGKTSSWQPRSSHTSSIHSATRRRM*GVISVC 351
           PK+   L P   +LK +    +  G+T SW+  + +   + S  R+   GV+  C
Sbjct: 16  PKTGIRLCPEEGLLKTKIWRMLLKGETGSWEQGAGNRERVISGYRQIQDGVLLCC 70


>SB_28218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 165 RDRSDKHGAVVRGTRQPRQWRGR 233
           RDRS+K G  VR  +Q R+ RGR
Sbjct: 71  RDRSEKVGVFVRDLKQRRRQRGR 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,404,944
Number of Sequences: 59808
Number of extensions: 544339
Number of successful extensions: 1896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)