Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N19
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -1

Query: 111 GRERAPECCT*CCDNDERPSRKS 43
           GR     CC  CCDN   P   S
Sbjct: 4   GRHVVMSCCCWCCDNLGGPGSSS 26


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = +3

Query: 579 PTCLLHRKQHHPYRSLQLGVASAVEAEMGCSRGDSARL 692
           P C ++RK HH   S        +    G    DS  L
Sbjct: 403 PNCKINRKVHHTTSSSSAAGGEGLADRRGSESSDSVLL 440


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 372 VRCDLGLHSAEVVSG 328
           V+  +G+HS EVV+G
Sbjct: 508 VKITIGIHSGEVVTG 522


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 381 TAHVRCDLGLHSAEVVSGDGIALL 310
           TAH+   L L S EV   DG+  L
Sbjct: 113 TAHLLAQLFLKSTEVTPRDGLGWL 136


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 372 VRCDLGLHSAEVVSG 328
           V+  +G+HS EVV+G
Sbjct: 508 VKITIGIHSGEVVTG 522


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +3

Query: 447 GDIVPGSVLEHL 482
           GDI PGS++E++
Sbjct: 386 GDIKPGSIIENI 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,301
Number of Sequences: 438
Number of extensions: 4285
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)