Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N19
(885 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47230.1 68414.m05228 cyclin, putative similar to cyclin A-li... 80 2e-15
At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc... 79 5e-15
At1g47230.2 68414.m05229 cyclin, putative similar to cyclin A-li... 76 3e-14
At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to c... 75 5e-14
At5g43080.1 68418.m05259 cyclin, putative similar to A-type cycl... 75 8e-14
At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyc... 73 2e-13
At1g47210.2 68414.m05226 cyclin family protein similar to A-type... 73 2e-13
At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyc... 72 4e-13
At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-li... 69 3e-12
At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2... 69 4e-12
At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin [... 66 3e-11
At1g47210.1 68414.m05225 cyclin family protein similar to A-type... 63 3e-10
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 62 6e-10
At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyc... 60 3e-09
At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2 [... 59 3e-09
At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1 pro... 57 1e-08
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 57 2e-08
At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [... 55 5e-08
At1g76310.1 68414.m08864 cyclin, putative similar to B-like cycl... 55 5e-08
At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-l... 55 7e-08
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-... 55 7e-08
At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25... 55 7e-08
At5g10440.1 68418.m01210 cyclin family protein similar to cyclin... 51 9e-07
At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to SP|... 50 2e-06
At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42... 50 2e-06
At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to SP|... 50 2e-06
At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to cyc... 49 4e-06
At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical... 47 1e-05
At5g67260.1 68418.m08478 cyclin family protein similar to cyclin... 42 4e-04
At4g03270.1 68417.m00446 cyclin family protein similar to CycD3;... 41 0.001
At3g50070.1 68416.m05474 cyclin family protein similar to cyclin... 40 0.002
At1g34460.1 68414.m04281 cyclin, putative strong similarity to c... 40 0.002
At3g18630.1 68416.m02367 uracil DNA glycosylase family protein c... 28 9.5
>At1g47230.1 68414.m05228 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 369
Score = 79.8 bits (188), Expect = 2e-15
Identities = 39/121 (32%), Positives = 72/121 (59%)
Frame = +1
Query: 334 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 513
+Y VQ+++TPHMR ++ +W++EV E+ + L IS++DRFLS+ + + ++QL+
Sbjct: 117 DYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQKLQLV 176
Query: 514 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDF 693
G + +L+ASK E G + + + T N+ T ++ S E +L L++++ T F
Sbjct: 177 GVSAMLIASKYEEIGPPKV--EDFCYITDNTFTKQEVVSMEADILLALQFELGSPTIKTF 234
Query: 694 L 696
L
Sbjct: 235 L 235
>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
3a [Arabidopsis thaliana] GI:509425; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
for cyclin 3b protein GI:728520
Length = 436
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/122 (33%), Positives = 71/122 (58%)
Frame = +1
Query: 331 ANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQL 510
ANY VQ +I P MR+++ +W++EV +D + L ++ +DRFLS + + ++QL
Sbjct: 191 ANYMELVQRDIDPDMRKILIDWLVEVSDDYKLVPDTLYLTVNLIDRFLSNSYIERQRLQL 250
Query: 511 LGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHD 690
LG +C+L+ASK E A + F TAN+ T ++ S E+ +L+ + + ++ T
Sbjct: 251 LGVSCMLIASKYEE--LSAPGVEEFCFITANTYTRPEVLSMEIQILNFVHFRLSVPTTKT 308
Query: 691 FL 696
FL
Sbjct: 309 FL 310
>At1g47230.2 68414.m05229 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 370
Score = 76.2 bits (179), Expect = 3e-14
Identities = 38/121 (31%), Positives = 70/121 (57%)
Frame = +1
Query: 334 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 513
+Y VQ+++TPHMR ++ +W++EV E+ + L IS++DRFLS+ + + ++QL+
Sbjct: 117 DYIEKVQSDLTPHMRAVLVDWLVEVAEEYKLVSDTLYLTISYVDRFLSVKPINRQKLQLV 176
Query: 514 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDF 693
G + +L+AS+ E D + T N+ T ++ S E +L L++++ T F
Sbjct: 177 GVSAMLIASRKYEEIGPPKVED-FCYITDNTFTKQEVVSMEADILLALQFELGSPTIKTF 235
Query: 694 L 696
L
Sbjct: 236 L 236
>At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to
cyclin 3a [Arabidopsis thaliana] GI:509425; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 437
Score = 75.4 bits (177), Expect = 5e-14
Identities = 49/168 (29%), Positives = 83/168 (49%)
Frame = +1
Query: 328 TANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQ 507
+ +Y VQ +I P MR ++ +W++EV E+ + L ++ +DRF+S + K ++Q
Sbjct: 191 STSYMVQVQRDIDPTMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFMSHNYIEKQKLQ 250
Query: 508 LLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAH 687
LLG C+L+ASK E + L + F T N+ T ++ S E+ VL+ L + ++ T
Sbjct: 251 LLGITCMLIASKYEEISAPRL--EEFCFITDNTYTRLEVLSMEIKVLNSLHFRLSVPTTK 308
Query: 688 DFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYESRCTLQHLAAA 831
FL + V + ++ A F L +Y L L AA
Sbjct: 309 TFLRRFIRAAQASDKVPLIEMEYLANYFAELTLTEYTFLRFLPSLIAA 356
>At5g43080.1 68418.m05259 cyclin, putative similar to A-type cyclins
from [Nicotiana tabacum] GI:1064931, [Catharanthus
roseus] GI:2190259; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 355
Score = 74.5 bits (175), Expect = 8e-14
Identities = 38/121 (31%), Positives = 69/121 (57%)
Frame = +1
Query: 334 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 513
+Y +Q ++T +MR ++ +W++EV E+ + LA+S++DRFLS+ V K ++QLL
Sbjct: 107 DYIEKIQKDVTSNMRGVLVDWLVEVAEEYKLLSDTLYLAVSYIDRFLSLKTVNKQRLQLL 166
Query: 514 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDF 693
G +L+ASK E D + T N+ T ++ E +L L++++ T++ F
Sbjct: 167 GVTSMLIASKYEE--ITPPNVDDFCYITDNTYTKQEIVKMEADILLALQFELGNPTSNTF 224
Query: 694 L 696
L
Sbjct: 225 L 225
>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 442
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/121 (31%), Positives = 66/121 (54%)
Frame = +1
Query: 334 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 513
+Y Q+ I MR ++ +W++EV E+ E LA++++DR+L+ A+ K +QLL
Sbjct: 198 DYMERTQSSINASMRSILIDWLVEVAEEYRLSPETLYLAVNYVDRYLTGNAINKQNLQLL 257
Query: 514 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDF 693
G C+++A+K E C + + T N+ +L E VL+ LK+++ TA F
Sbjct: 258 GVTCMMIAAKYEE--VCVPQVEDFCYITDNTYLRNELLEMESSVLNYLKFELTTPTAKCF 315
Query: 694 L 696
L
Sbjct: 316 L 316
>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 372
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/121 (31%), Positives = 68/121 (56%)
Frame = +1
Query: 334 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 513
+Y VQ ++TP MR ++ +W++EV E+ E L +S +DRFLS+ V K ++QL+
Sbjct: 124 DYIEKVQKDVTPSMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSLKTVNKQKLQLV 183
Query: 514 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDF 693
G + +L+ASK E + D + T N+ + D+ E +L L++++ T + F
Sbjct: 184 GVSAMLIASKYEEISPPKV--DDFCYITDNTFSKQDVVKMEADILLALQFELGRPTINTF 241
Query: 694 L 696
+
Sbjct: 242 M 242
>At1g44110.1 68414.m05095 cyclin, putative similar to mitotic cyclin
a2-type [Glycine max] GI:857397, cyclin A-like protein
[Nicotiana tabacum] GI:1064927; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 460
Score = 72.1 bits (169), Expect = 4e-13
Identities = 37/130 (28%), Positives = 70/130 (53%)
Frame = +1
Query: 307 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 486
+E + +Y VQ ++ MR ++ +W++EV E+ E L ++++DR+LS
Sbjct: 205 SEAKKRPDVDYMERVQKDVNSSMRGILVDWLIEVSEEYRLVPETLYLTVNYIDRYLSGNV 264
Query: 487 VGKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWD 666
+ + ++QLLG AC+++A+K E CA + + T N+ ++ E VL+ LK++
Sbjct: 265 ISRQKLQLLGVACMMIAAKYEE--ICAPQVEEFCYITDNTYLKDEVLDMESDVLNYLKFE 322
Query: 667 VAGVTAHDFL 696
+ T FL
Sbjct: 323 MTAPTTKCFL 332
>At1g47220.1 68414.m05227 cyclin, putative similar to cyclin A-like
protein [Nicotiana tabacum] GI:1064931, A-type cyclin
[Catharanthus roseus] GI:2190259; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 327
Score = 69.3 bits (162), Expect = 3e-12
Identities = 37/121 (30%), Positives = 67/121 (55%)
Frame = +1
Query: 334 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 513
+Y +Q +ITP R ++ +W++EV E+ E L +S++DRFLS+ V + +QL+
Sbjct: 78 DYIEKIQEDITPSKRGVLVDWLVEVAEEFELVSETLYLTVSYIDRFLSLKMVNEHWLQLV 137
Query: 514 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDF 693
G + + +ASK E + + + TAN+ T D+ E +L L++++ T + F
Sbjct: 138 GVSAMFIASKYEEKRRPKV--EDFCYITANTYTKQDVLKMEEDILLALEFELGRPTTNTF 195
Query: 694 L 696
L
Sbjct: 196 L 196
>At4g35620.1 68417.m05059 cyclin 2b (CYC2b) identical to cyclin 2b
protein [Arabidopsis thaliana] GI:509423
Length = 429
Score = 68.9 bits (161), Expect = 4e-12
Identities = 49/162 (30%), Positives = 85/162 (52%)
Frame = +1
Query: 313 ERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVG 492
ER++ + Q +I+ MR ++ +W++EV + E L ++ +DRFLS AV
Sbjct: 184 ERFSCVPLDYMAQQFDISDKMRAILIDWLIEVHDKFELMNETLFLTVNLIDRFLSKQAVA 243
Query: 493 KSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVA 672
+ ++QL+G LLLA K E S + DL+V + + T TD+ E ++LS L+++++
Sbjct: 244 RKKLQLVGLVALLLACKYEEV-SVPIVEDLVVI-SDKAYTRTDVLEMEKIMLSTLQFNMS 301
Query: 673 GVTAHDFLPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYE 798
T + FL L + + + ++ A I LA DYE
Sbjct: 302 LPTQYPFLKRFL-----KAAQSDKKLEILASFLIELALVDYE 338
>At5g06150.1 68418.m00684 cyclin 1b (CYC1b) identical to cyclin
[Arabidopsis thaliana] GI:1360646
Length = 445
Score = 66.1 bits (154), Expect = 3e-11
Identities = 39/116 (33%), Positives = 63/116 (54%)
Frame = +1
Query: 349 VQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACL 528
+QTE+ MR ++ +W+LEV E L ++ +DRFLS+ AV K ++QL+G + L
Sbjct: 205 IQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFLSVKAVPKRELQLVGISAL 264
Query: 529 LLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFL 696
L+ASK E + LV+ T N+ + + E +L L+W + T + FL
Sbjct: 265 LIASKYEE--IWPPQVNDLVYVTDNAYSSRQILVMEKAILGNLEWYLTVPTQYVFL 318
>At1g47210.1 68414.m05225 cyclin family protein similar to A-type
cyclin [Catharanthus roseus] GI:2190259; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 192
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/69 (39%), Positives = 45/69 (65%)
Frame = +1
Query: 334 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 513
+Y VQ ++TP MR ++ +W++EV E+ E L +S +DRFLS+ V K ++QL+
Sbjct: 124 DYIEKVQKDVTPSMRGVLVDWLVEVAEEYKLGSETLYLTVSHIDRFLSLKTVNKQKLQLV 183
Query: 514 GTACLLLAS 540
G + +L+AS
Sbjct: 184 GVSAMLIAS 192
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 61.7 bits (143), Expect = 6e-10
Identities = 37/115 (32%), Positives = 59/115 (51%)
Frame = +1
Query: 352 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 531
Q EI MR ++ +W++EV E L ++ +DRFLS+ V + ++QL+G + LL
Sbjct: 183 QPEIDEKMRSILIDWLVEVHVKFDLSPETLYLTVNIIDRFLSLKTVPRRELQLVGVSALL 242
Query: 532 LASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFL 696
+ASK E + LV+ T NS + E +L L+W + T + FL
Sbjct: 243 IASKYEE--IWPPQVNDLVYVTDNSYNSRQILVMEKTILGNLEWYLTVPTQYVFL 295
>At2g17620.1 68415.m02038 cyclin, putative (CYC2a) similar to cyclin
2b protein [Arabidopsis thaliana] GI:509423; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain; identical to cDNA
cyc2a mRNA for cyclin 2a protein GI:728518
Length = 429
Score = 59.7 bits (138), Expect = 3e-09
Identities = 40/134 (29%), Positives = 69/134 (51%)
Frame = +1
Query: 307 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 486
T ER++ + Q ++ MR ++ +W++EV + E L ++ +DRFLS
Sbjct: 181 TMERFSCVPVDYMMQQIDLNEKMRAILIDWLIEVHDKFDLINETLFLTVNLIDRFLSKQN 240
Query: 487 VGKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWD 666
V + ++QL+G LLLA K E S + D LV + + T D+ E +LS L+++
Sbjct: 241 VMRKKLQLVGLVALLLACKYEEV-SVPVVED-LVLISDKAYTRNDVLEMEKTMLSTLQFN 298
Query: 667 VAGVTAHDFLPLLL 708
++ T + FL L
Sbjct: 299 ISLPTQYPFLKRFL 312
>At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276, cyclin [Medicago
sativa] GI:1050559; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 450
Score = 59.3 bits (137), Expect = 3e-09
Identities = 44/166 (26%), Positives = 71/166 (42%)
Frame = +1
Query: 334 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 513
++ +Q ++T MR ++ +W++EV E+ + L + +D FL V + Q+QLL
Sbjct: 208 DFMERIQKDVTQSMRGILVDWLVEVSEEYTLASDTLYLTVYLIDWFLHGNYVQRQQLQLL 267
Query: 514 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDF 693
G C+L+ASK E + + + F T N+ T + E VL + + T F
Sbjct: 268 GITCMLIASKYEEISAPRI--EEFCFITDNTYTRDQVLEMENQVLKHFSFQIYTPTPKTF 325
Query: 694 LPLLLSRLPIRGLVNVEMVQRHAKTFISLAARDYESRCTLQHLAAA 831
L L L V+ A L DY L + AA
Sbjct: 326 LRRFLRAAQASRLSPSLEVEFLASYLTELTLIDYHFLKFLPSVVAA 371
>At2g26760.1 68415.m03209 cyclin, putative similar to CYCB1-1
protein [Petunia x hybrida] GI:6093215, B-type cyclin
[Nicotiana tabacum] GI:849074; contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 387
Score = 57.2 bits (132), Expect = 1e-08
Identities = 37/130 (28%), Positives = 64/130 (49%)
Frame = +1
Query: 307 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 486
T E +Y G+ Q EI MR ++ +W+++V E L I+ +DRFLS+
Sbjct: 140 TVEEEGGIKDYIGS-QPEINEKMRSILIDWLVDVHRKFELMPETLYLTINLVDRFLSLTM 198
Query: 487 VGKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWD 666
V + ++QLLG +L+A K E A + V + N+ + + E +L +++W
Sbjct: 199 VHRRELQLLGLGAMLIACKYEE--IWAPEVNDFVCISDNAYNRKQVLAMEKSILGQVEWY 256
Query: 667 VAGVTAHDFL 696
+ T + FL
Sbjct: 257 ITVPTPYVFL 266
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 56.8 bits (131), Expect = 2e-08
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = +1
Query: 376 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSI--CAVGKSQV-QLLGTACLLLASKL 546
RR W+ + CE F LA+++LDRFLS+ GK + QLL ACL LA+K+
Sbjct: 78 RRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKI 137
Query: 547 REPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLLLSRL 717
E + DL V + ELLVL+KLKW + +T ++ L ++
Sbjct: 138 EET-EVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKM 193
>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 461
Score = 55.2 bits (127), Expect = 5e-08
Identities = 33/121 (27%), Positives = 59/121 (48%)
Frame = +1
Query: 334 NYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL 513
++ Q ++T MR ++ +W++EV E+ + L + +D FL V + ++QLL
Sbjct: 217 DFMEKTQRDVTETMRGILVDWLVEVSEEYTLVPDTLYLTVYLIDWFLHGNYVERQRLQLL 276
Query: 514 GTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDF 693
G C+L+ASK E + + + F T N+ T + E VL + + T+ F
Sbjct: 277 GITCMLIASKYEEIHAPRI--EEFCFITDNTYTRDQVLEMESQVLKHFSFQIYTPTSKTF 334
Query: 694 L 696
L
Sbjct: 335 L 335
>At1g76310.1 68414.m08864 cyclin, putative similar to B-like cyclin
GI:780267 from (Medicago sativa); contains Pfam profiles
PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
C-terminal domain
Length = 431
Score = 55.2 bits (127), Expect = 5e-08
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Frame = +1
Query: 310 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA- 486
E R V NY Q +I MR ++ +W++EV EE L I+ +DRFL++
Sbjct: 189 ECRSCVPPNYMEN-QHDINERMRGILFDWLIEVHYKFELMEETLYLTINLIDRFLAVHQH 247
Query: 487 VGKSQVQLLGTACLLLASKLREPGSCALP-ADLLVFYTANSITLTDLCSWELLVLSKLKW 663
+ + ++QL+G +LLA K E ++P D L+ + + T T++ E L+ + L++
Sbjct: 248 IARKKLQLVGVTAMLLACKYEE---VSVPVVDDLILISDKAYTRTEILDMEKLMANTLQF 304
Query: 664 DVAGVTAHDFL 696
+ T + F+
Sbjct: 305 NFCLPTPYVFM 315
>At4g37490.1 68417.m05305 G2/mitotic-specific cyclin (CYC1) / B-like
cyclin (CYC1) identical to SP|P30183 G2/mitotic-specific
cyclin (B-like cyclin) {Arabidopsis thaliana}
Length = 428
Score = 54.8 bits (126), Expect = 7e-08
Identities = 34/115 (29%), Positives = 60/115 (52%)
Frame = +1
Query: 352 QTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLLGTACLL 531
Q +I MR ++ EW+++V E F L ++ LDRFLS+ V + ++QL+G + LL
Sbjct: 189 QPDINEKMRLILVEWLIDVHVRFELNPETFYLTVNILDRFLSVKPVPRKELQLVGLSALL 248
Query: 532 LASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFL 696
+++K E + LV ++ + + E +LS L+W + T + FL
Sbjct: 249 MSAKYEE--IWPPQVEDLVDIADHAYSHKQILVMEKTILSTLEWYLTVPTHYVFL 301
>At1g20610.1 68414.m02575 cyclin, putative similar to
G2/mitotic-specific cyclins (B-like cyclin) from
{Medicago varia} SP|P46278, SP|P46277; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 429
Score = 54.8 bits (126), Expect = 7e-08
Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Frame = +1
Query: 310 EERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAV 489
E+ V NY Q ++ MR ++ +W++EV EE L I+ +DRFL++ +
Sbjct: 189 EKLSCVPPNYMDN-QQDLNERMRGILIDWLIEVHYKFELMEETLYLTINVIDRFLAVHQI 247
Query: 490 GKSQVQLLGTACLLLASKLREPGSCALP-ADLLVFYTANSITLTDLCSWELLVLSKLKWD 666
+ ++QL+G LLLA K E ++P D L+ + + + ++ E L+ + L+++
Sbjct: 248 VRKKLQLVGVTALLLACKYEE---VSVPVVDDLILISDKAYSRREVLDMEKLMANTLQFN 304
Query: 667 VAGVTAHDFLPLLL 708
+ T + F+ L
Sbjct: 305 FSLPTPYVFMKRFL 318
>At1g16330.1 68414.m01954 cyclin family protein similar to SP|P25011
G2/mitotic-specific cyclin S13-6 (B-like cyclin)
{Glycine max}; contains Pfam profiles PF00134: Cyclin,
N-terminal domain, PF02984: Cyclin, C-terminal domain
Length = 396
Score = 54.8 bits (126), Expect = 7e-08
Identities = 35/130 (26%), Positives = 62/130 (47%)
Frame = +1
Query: 307 TEERYAVTANYFGTVQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICA 486
T E ++ + E++P R ++ W++EV E L + LDR+LS
Sbjct: 153 TAEALNPALGHYLSAHAEVSPVTRGILINWLIEVHFKFDLMHETLYLTMDLLDRYLSQVP 212
Query: 487 VGKSQVQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWD 666
+ K+++QL+G LLLASK + + L+ +A S T + E +L +LK+
Sbjct: 213 IHKNEMQLIGLTALLLASKYEDYWHPRIKD--LISISAESYTREQILGMERSMLKQLKFR 270
Query: 667 VAGVTAHDFL 696
+ T + F+
Sbjct: 271 LNAPTPYVFM 280
>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
D2.1 protein [Nicotiana tabacum] GI:4160298; contains
Pfam profile PF00134: Cyclin, N-terminal domain
Length = 298
Score = 51.2 bits (117), Expect = 9e-07
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Frame = +1
Query: 394 WMLEVCEDRGCQEEVFPLAISFLDRFLSICAV--GKS-QVQLLGTACLLLASKLREPGSC 564
W+ + CE+ LA+++LDRFLS+ + GK+ VQLL ACL LA+K+ E
Sbjct: 75 WIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVP 134
Query: 565 ALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLLLSRL 717
L L V + ELLVL+ L+W + VT ++ LS++
Sbjct: 135 EL-MQLQVGAPMFVFEAKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKI 184
>At4g34160.1 68417.m04847 cyclin delta-3 (CYCD3) identical to
SP|P42753 Cyclin delta-3 {Arabidopsis thaliana}
Length = 376
Score = 50.4 bits (115), Expect = 2e-06
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Frame = +1
Query: 376 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKL 546
R+ W+L V G LAI++LD+F+ ++ + + +QL+ ACL LA+K+
Sbjct: 87 RKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSLQRDKPWMLQLVSVACLSLAAKV 146
Query: 547 REPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLLLSRLPIR 726
E L D V T + ELL+LS L+W + +T F+ ++ RL ++
Sbjct: 147 EET-QVPLLLDFQVEETKYVFEAKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLK 205
Query: 727 GLVNVEMVQRHAKTFISL 780
+ + + + + +S+
Sbjct: 206 NNAHWDFLNKCHRLLLSV 223
>At4g37630.1 68417.m05323 cyclin family protein similar to SP|P42753
Cyclin delta-3 {Arabidopsis thaliana}; contains Pfam
profile PF00134: Cyclin, N-terminal domain
Length = 323
Score = 50.0 bits (114), Expect = 2e-06
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Frame = +1
Query: 340 FGTVQTEITPHMRRLVA-EWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ----- 501
F T+ ++ T RL+A +W+L G Q + +AIS+ D FL +G +
Sbjct: 59 FETLPSKTTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWA 118
Query: 502 VQLLGTACLLLASKLRE---PGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVA 672
++LL ACL LA+K+ E PG P D + + I T ELL+LS L W +
Sbjct: 119 MRLLSVACLSLAAKMEERIVPGLSQYPQDHDFVFKPDVIRKT-----ELLILSTLDWKMN 173
Query: 673 GVTAHDFLPLLLSRL 717
+T + L+++
Sbjct: 174 LITPFHYFNYFLAKI 188
>At2g22490.1 68415.m02668 cyclin delta-2 (CYCD2) identical to
SP|P42752 Cyclin delta-2 {Arabidopsis thaliana}
Length = 361
Score = 50.0 bits (114), Expect = 2e-06
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Frame = +1
Query: 373 MRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQ---VQLLGTACLLLASK 543
+R +W+L+VC L++++LDRFL+ + K + QLL +CL LASK
Sbjct: 96 VRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASK 155
Query: 544 LREPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLLLSRLPI 723
+ E + DL V + ELLV++ L W + +T F+ + + I
Sbjct: 156 MEETDVPHI-VDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDK--I 212
Query: 724 RGLVNVEMVQRHAKTFIS 777
G V+ ++ R ++ ++
Sbjct: 213 SGHVSENLIYRSSRFILN 230
>At1g14750.1 68414.m01763 cyclin, putative (SDS) identical to
cyclin-like protein [Arabidopsis thaliana] GI:20302467;
low similarity to SP|P30278 G2/mitotic-specific cyclin 2
(B-like cyclin) (CycMs2 {Medicago sativa}; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 578
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +1
Query: 355 TEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQLL-GTACLL 531
T + P +R ++ +W+++ C D G Q+E L + LDRFLS + + +L G A L
Sbjct: 380 TGLIPRLRSIMVQWIVKQCSDMGLQQETLFLGVGLLDRFLSKGSFKSERTLILVGIASLT 439
Query: 532 LASKLRE 552
LA+++ E
Sbjct: 440 LATRIEE 446
>At1g70210.1 68414.m08079 cyclin delta-1 (CYCD1) nearly identical to
SP|P42751 Cyclin delta-1 {Arabidopsis thaliana}
Length = 339
Score = 47.2 bits (107), Expect = 1e-05
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Frame = +1
Query: 310 EERYAVTAN-YFGTVQTE-ITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSIC 483
+ER+ V + Y QT + R W+L+V Q LA++++DRFL
Sbjct: 58 DERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYAR 117
Query: 484 AVGKSQ---VQLLGTACLLLASKLREPGSCALPADLLVFYTANSITLTD---LCSWELLV 645
+ ++ +QLL ACL LA+K+ E L L F A L + + ELLV
Sbjct: 118 RLPETSGWPMQLLAVACLSLAAKMEE----ILVPSLFDFQVAGVKYLFEAKTIKRMELLV 173
Query: 646 LSKLKWDVAGVTAHDFLPLLLSRLPIRG 729
LS L W + VT DF+ ++ G
Sbjct: 174 LSVLDWRLRSVTPFDFISFFAYKIDPSG 201
>At5g67260.1 68418.m08478 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 367
Score = 42.3 bits (95), Expect = 4e-04
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
Frame = +1
Query: 376 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQV---QLLGTACLLLASKL 546
R+ +W+L V G LA+++ DRF++ + + QL+ A L LA+K+
Sbjct: 96 RKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQLVAVASLSLAAKV 155
Query: 547 REPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLLLSRLPIR 726
E L DL V + ELL+LS L+W + VT F ++ R +
Sbjct: 156 EEI-QVPLLLDLQVEEARYLFEAKTIQRMELLILSTLQWRMHPVTPISFFDHIIRRFGSK 214
Query: 727 GLVNVEMVQRHAKTFISLAA 786
++ ++ + IS+ A
Sbjct: 215 WHQQLDFCRKCERLLISVIA 234
>At4g03270.1 68417.m00446 cyclin family protein similar to CycD3;2
[Lycopersicon esculentum] GI:6434199 ; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 302
Score = 41.1 bits (92), Expect = 0.001
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Frame = +1
Query: 445 LAISFLDRFLSICAVGKSQ---VQLLGTACLLLASKLREPGSCALPADLLV---FYTANS 606
LA+++LDRFLS + +S+ ++L+ +C+ L++K+R+P +DL V F+ A
Sbjct: 80 LAVNYLDRFLSSEDMPQSKPWILKLISLSCVSLSAKMRKPDMSV--SDLPVEGEFFDAQM 137
Query: 607 ITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLLLSRLPIR 726
I E ++L LKW + VT FL +S ++
Sbjct: 138 IE-----RMENVILGALKWRMRSVTPFSFLAFFISLFELK 172
>At3g50070.1 68416.m05474 cyclin family protein similar to cyclin
D3.1 protein [Nicotiana tabacum] GI:4160300, CycD3;2
[Lycopersicon esculentum] GI:6434199; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 361
Score = 40.3 bits (90), Expect = 0.002
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Frame = +1
Query: 376 RRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQV---QLLGTACLLLASKL 546
R +W+ +V G LA+++ DRF++ + QL ACL LA+K+
Sbjct: 86 REKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKV 145
Query: 547 REPGSCALPADLLVFYTANSITLTDLCSWELLVLSKLKWDVAGVTAHDFLPLLLSRLPIR 726
E L D V + ELLVLS L W + VT F ++ R +
Sbjct: 146 EEIRVPFL-LDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFK 204
Query: 727 GLVNVEMVQRHAKTFISL 780
+E + R +S+
Sbjct: 205 SHHQLEFLSRCESLLLSI 222
>At1g34460.1 68414.m04281 cyclin, putative strong similarity to
cyclin [Arabidopsis thaliana] GI:1360646
Length = 504
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 349 VQTEITPHMRRLVAEWMLEVCEDRGCQEEVFPLAISFLDRFLSICAVGKSQVQL 510
+QTE+ MR ++ +W+LEV E L ++ +DRFL + AV K ++Q+
Sbjct: 295 IQTEMNEKMRAILIDWLLEVHIKFELNLETLYLTVNIIDRFLYVKAVPKRELQV 348
>At3g18630.1 68416.m02367 uracil DNA glycosylase family protein
contains Pfam profile: PF03167 uracil DNA glycosylase
superfamily
Length = 330
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 514 PKVALDFFPPRRCSRTDPGTIS-PVERLLLGSRDL 413
PK +DFF P + + P + S P + GSRDL
Sbjct: 6 PKTLMDFFQPAKRLKASPSSSSFPAVSVAGGSRDL 40
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,647,810
Number of Sequences: 28952
Number of extensions: 356446
Number of successful extensions: 1271
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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