Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N16
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 186 3e-48
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 83 6e-17
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 58 2e-09
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 48 2e-06
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 38 0.001
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 32 0.088
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.62
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 29 0.82
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 27 4.4
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 26 7.6
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 186 bits (453), Expect = 3e-48
Identities = 83/170 (48%), Positives = 122/170 (71%)
Frame = +2
Query: 329 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 508
GT+I A + GV++ ADSRTT GAYIANRVTDKLT++TD I+CCRSGSAADTQ +AD++
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 509 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGGM 688
Y+L+ ++++ G P V TAA + E+CY ++ L AG++VAG+D+K G +YSIP+GG
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGS 143
Query: 689 VQRQAVSIGGSGSSYXLWLR*RQFQAQYDQGRSQKFVTDTLTLAILRDGS 838
+ +Q ++IGGSGS++ F+ Q + +F+ + + LA+ RDGS
Sbjct: 144 LHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGS 193
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 82.6 bits (195), Expect = 6e-17
Identities = 45/170 (26%), Positives = 88/170 (51%)
Frame = +2
Query: 323 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 502
STGT+I+ +V+GAD+R T G IA++ KL I+ I+C +G+AADT+ +
Sbjct: 33 STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTS 92
Query: 503 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 682
+++ ++ H + P V TA + ++ + Y+ + A +++ G+D KG +++I
Sbjct: 93 MISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYD-CKGPHLFTIAAH 151
Query: 683 GMVQRQAVSIGGSGSSYXLWLR*RQFQAQYDQGRSQKFVTDTLTLAILRD 832
G + GSGS + + ++Q ++ + + V + + I D
Sbjct: 152 GSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFND 201
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 57.6 bits (133), Expect = 2e-09
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Frame = +2
Query: 329 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 508
GT+ +A + G+V+ DSR + G IA++ K+ +I + +G AAD Q ++
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120
Query: 509 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 685
H++ + V A+ I + Y+Y+ L G ++AG K G +Y I G
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAG-TGKGGTALYYIDSDG 179
Query: 686 MVQRQAVSIGGSGSSY 733
+ + GSGS++
Sbjct: 180 TRLKGDLFSVGSGSTF 195
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 47.6 bits (108), Expect = 2e-06
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Frame = +2
Query: 329 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 508
G + +A DG ++ D+R+ G I R ++ ++ D + SG AD A+ +
Sbjct: 13 GGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRI 72
Query: 509 TYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGG 685
++ + ++ A + R L Y R VAG DK+ +IYS G
Sbjct: 73 QQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVG 132
Query: 686 MVQRQAVSIGGSGSSY 733
+R+ GGS +++
Sbjct: 133 SYEREWCRAGGSAANF 148
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 317 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 496
P TG+S++A +F GV+I AD+ + G+ ++LTK+ D G +D Q I
Sbjct: 39 PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 32.3 bits (70), Expect = 0.088
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 7/151 (4%)
Frame = +2
Query: 323 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 502
+ G + + + GVV+ + + T+ I + +K+ IT I SG D + + D
Sbjct: 29 NAGVTSVGIKATDGVVLATEKKPTSELAIGASL-EKVCAITPDIGMVYSGMGPDFRVLVD 87
Query: 503 IV--TYHLNFHKMELGDPP---LVETAAAIFRELCYNYR-DSLMAGILVAGWDKKKGAQI 664
+ K+ PP LV+ A++ +E + +LVAG D +KG +
Sbjct: 88 KSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMD-EKGPSL 146
Query: 665 YSI-PIGGMVQRQAVSIGGSGSSYXLWLR*R 754
Y + P G +A +IG S ++ +L R
Sbjct: 147 YQVDPSGTYFAWKATAIGKSSTAAKTFLEKR 177
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.62
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 356 DGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCR 466
+ G+V+G DSR +Y+ +T+ T TDQI R
Sbjct: 521 ENGIVLGVDSRKKINSYVEKSLTEDETD-TDQIISSR 556
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.82
Identities = 17/78 (21%), Positives = 33/78 (42%)
Frame = +2
Query: 329 GTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIV 508
GT+ +A + +VIG + + + K+ + + + +G AD + + D
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLAFAGLNADARILIDKA 88
Query: 509 TYHLNFHKMELGDPPLVE 562
HK+ L DP +E
Sbjct: 89 RVEAQNHKLNLADPVSIE 106
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 625 FSCWMGQKERSSNLLHTYWWYGAAPSGVNWGL 720
F+ W+G S +L H +W +GA + G+
Sbjct: 511 FAWWIGYGPHSFHLYHWWWTWGAWGGTIGGGI 542
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 548 PPLVETAAAIFRELC 592
PPL++T +++F ELC
Sbjct: 284 PPLIQTLSSLFSELC 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,404,332
Number of Sequences: 5004
Number of extensions: 70449
Number of successful extensions: 178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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