Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N16
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 192 4e-49
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 190 1e-48
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 89 5e-18
06_01_0539 + 3869156-3869908 47 2e-05
06_01_0529 + 3831100-3831852 47 2e-05
06_01_0479 + 3419657-3420337 47 2e-05
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 36 0.040
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 34 0.16
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 33 0.37
01_01_0471 - 3467275-3467351,3467526-3467895,3468258-3468555,346... 30 2.0
08_02_0993 + 23390237-23390516,23391261-23391438,23391865-233919... 29 4.6
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 192 bits (467), Expect = 4e-49
Identities = 88/176 (50%), Positives = 123/176 (69%)
Frame = +2
Query: 311 SAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQ 490
S H GT+I+ +DGGVV+ ADSRT+TG Y+ANR +DK+T++TD +Y CRSGSAADTQ
Sbjct: 19 SGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQ 78
Query: 491 AIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYS 670
I+D V Y L+ H ++LG P V+ AA + R L Y ++ L AG++V GWDK +G QI+S
Sbjct: 79 VISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFS 138
Query: 671 IPIGGMVQRQAVSIGGSGSSYXLWLR*RQFQAQYDQGRSQKFVTDTLTLAILRDGS 838
+P+GG + RQ +IGGSGSSY L +++ Q ++KFV ++LAI RDG+
Sbjct: 139 VPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGA 194
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 190 bits (463), Expect = 1e-48
Identities = 87/176 (49%), Positives = 123/176 (69%)
Frame = +2
Query: 311 SAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQ 490
S H GT+I+ +DGGVV+ ADSRT+TG Y+ANR +DK+T++TD +Y CRSGSAADTQ
Sbjct: 19 SGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQ 78
Query: 491 AIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYS 670
I++ V Y L+ H ++LG P V+ AA + R L Y ++ L AG++V GWDK +G QI+S
Sbjct: 79 VISEYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFS 138
Query: 671 IPIGGMVQRQAVSIGGSGSSYXLWLR*RQFQAQYDQGRSQKFVTDTLTLAILRDGS 838
+P+GG + RQ +IGGSGSSY L +++ Q ++KFV ++LAI RDG+
Sbjct: 139 VPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGA 194
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 88.6 bits (210), Expect = 5e-18
Identities = 46/156 (29%), Positives = 87/156 (55%)
Frame = +2
Query: 326 TGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADI 505
TGT+I+ F GVV+GAD+R T G +A++ +K+ + IYCC +G+AADT+A+ D+
Sbjct: 37 TGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDM 96
Query: 506 VTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIGG 685
V+ L H+ G V T+ + + ++Y+ + A +++ G D G ++++ G
Sbjct: 97 VSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHVSAALVLGGVD-VTGPHLHTVYPHG 155
Query: 686 MVQRQAVSIGGSGSSYXLWLR*RQFQAQYDQGRSQK 793
+ GSGS + + F+++Y +G +++
Sbjct: 156 STDTLPFATMGSGSLAAMSV----FESKYKEGLTRE 187
>06_01_0539 + 3869156-3869908
Length = 250
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Frame = +2
Query: 308 MSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADT 487
M A + G+++ DG V++G + + T+ +R +K+ KI + C +G +D
Sbjct: 25 MEAIGNAGSALGVLAADGVVLVG-EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDA 83
Query: 488 QAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKK 652
+ + H + + +P VE + Y L AGWDK
Sbjct: 84 NILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHH 143
Query: 653 GAQIY-SIPIGGMVQRQAVSIGGSGSS 730
G Q+Y S P G +A ++G + +
Sbjct: 144 GFQLYMSDPSGNYSGWKAAAVGANSQA 170
>06_01_0529 + 3831100-3831852
Length = 250
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Frame = +2
Query: 308 MSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADT 487
M A + G+++ DG V++G + + T+ +R +K+ KI + C +G +D
Sbjct: 25 MEAIGNAGSALGVLAADGVVLVG-EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDA 83
Query: 488 QAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKK 652
+ + H + + +P VE + Y L AGWDK
Sbjct: 84 NILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHH 143
Query: 653 GAQIY-SIPIGGMVQRQAVSIGGSGSS 730
G Q+Y S P G +A ++G + +
Sbjct: 144 GFQLYMSDPSGNYSGWKAAAVGANSQA 170
>06_01_0479 + 3419657-3420337
Length = 226
Score = 46.8 bits (106), Expect = 2e-05
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Frame = +2
Query: 308 MSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADT 487
M A + G+++ DG V++G + + T+ +R +K+ KI + C +G +D
Sbjct: 1 MEAIGNAGSALGVLAADGVVLVG-EKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDA 59
Query: 488 QAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKK 652
+ + H + + +P VE + Y L AGWDK
Sbjct: 60 NILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHH 119
Query: 653 GAQIY-SIPIGGMVQRQAVSIGGSGSS 730
G Q+Y S P G +A ++G + +
Sbjct: 120 GFQLYMSDPSGNYSGWKAAAVGANSQA 146
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 35.9 bits (79), Expect = 0.040
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Frame = +2
Query: 317 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 496
P+ TG+SI+A ++ GV++ +D+ + G+ + + +++ + SG +D Q I
Sbjct: 365 PYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSDFQEI 424
Query: 497 ADIV-TYHLNFHKMELGDPPLVETAAAIFRELCYNYR---DSLMAGILVAGWDK-KKGAQ 661
+ L+ H + G+ + + + YN R D L +++ G K KG +
Sbjct: 425 LRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKKGPKGEE 484
Query: 662 IY 667
Y
Sbjct: 485 KY 486
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = +2
Query: 566 AAAIFRELCYNYRD-SLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAVSIGGSGSSYXLW 742
A+ + + Y+YR L G ++AGWD+K Y G + S+ GSGS Y
Sbjct: 85 ASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLYYVDSEGARLMGSRFSV-GSGSLYAYG 143
Query: 743 LR*RQFQAQYDQGRSQKFVTDTLTLAILRDGS 838
+ ++ + + + A RDG+
Sbjct: 144 ILDEGYRYVMPVEEAAELARRAIYQATFRDGA 175
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 32.7 bits (71), Expect = 0.37
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 620 GILVAGWDKKKGAQIYSIPIGGMVQRQAVSIGGSGSSYXLWLR*RQFQAQYDQGRSQKFV 799
G+LVAG D+ Y+ P G + QA +IG + +L R+F+ Y+ ++ +
Sbjct: 133 GLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLE-RRFEG-YNDYTPEQLI 190
Query: 800 TDTLT 814
D L+
Sbjct: 191 KDALS 195
>01_01_0471 -
3467275-3467351,3467526-3467895,3468258-3468555,
3468680-3469734,3469823-3470467
Length = 814
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 293 CLPEWMSAPHSTGTSIMACEFDGGVVIGADS-RTTTGAYIANRVTDKLTKITDQIYCCRS 469
C P+ +S H G S + D A R T A++ + VTDKLT + + +S
Sbjct: 623 CTPKRISNGHKGGASGGSAISDSEDPFRASQLRYTPRAHLIHSVTDKLTVLAKEAASQKS 682
Query: 470 GSAADTQAIADIVT 511
S +A D VT
Sbjct: 683 CSRGKCRAFVDQVT 696
>08_02_0993 +
23390237-23390516,23391261-23391438,23391865-23391940,
23392037-23392212,23392296-23392377,23392639-23392716,
23393525-23393686,23393980-23394243,23394698-23394802,
23395304-23395447
Length = 514
Score = 29.1 bits (62), Expect = 4.6
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 211 TSNLYFFQFITYYQ 252
TSN ++FQF+TYYQ
Sbjct: 226 TSNQFYFQFLTYYQ 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,485,531
Number of Sequences: 37544
Number of extensions: 486546
Number of successful extensions: 1071
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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