Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N16
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...   173   1e-43
Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    92   4e-19
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    69   3e-12
AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...    40   0.003
Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    32   0.58 
Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome al...    28   7.2  
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score =  173 bits (422), Expect = 1e-43
 Identities = 81/172 (47%), Positives = 114/172 (66%)
 Frame = +2

Query: 323 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 502
           STGT+++A E++GGVV+G DSRT+ G++I +R T+K+T ITD +  CRSGSAADTQAIAD
Sbjct: 21  STGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIAD 80

Query: 503 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 682
           I  YH++ + M    P  +  ++ IFR+  YNYR+ L A +LVAGWD++ G Q+Y+IPIG
Sbjct: 81  IAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIPIG 140

Query: 683 GMVQRQAVSIGGSGSSYXLWLR*RQFQAQYDQGRSQKFVTDTLTLAILRDGS 838
           G V RQ  +  GSGS++       Q++        +  V   + LA  RDGS
Sbjct: 141 GFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGS 192


>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 53/172 (30%), Positives = 89/172 (51%)
 Frame = +2

Query: 323 STGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIAD 502
           STGT+I+A  F GG+V+GADSR T G  IA++  +K+ K+T+ IY C +G+AAD   +  
Sbjct: 44  STGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTK 103

Query: 503 IVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRDSLMAGILVAGWDKKKGAQIYSIPIG 682
           +++ +L   ++  G    V TA    ++  +NY+  + A +L+ G D   G  +Y     
Sbjct: 104 MLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYLLIGGVD-PTGPHLYMCSAN 162

Query: 683 GMVQRQAVSIGGSGSSYXLWLR*RQFQAQYDQGRSQKFVTDTLTLAILRDGS 838
           G       +  GSGS   + +  R F+    +  ++K V   L   +  D +
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQRALEAGMHGDNA 214


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
 Frame = +2

Query: 359 GGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKME 538
           GG+++  DSR ++G YI+++   K+  I D++    +G AAD Q    IV  +   +++ 
Sbjct: 81  GGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELR 140

Query: 539 LGDPPLVETAAAIFRELCYNYR-DSLMAGILVAGWDKKKGAQIYSIPI-GGMVQRQAVSI 712
                 V  A+  F    Y YR   L  G +VAG+D KKG QI+ +   G   Q +  S+
Sbjct: 141 EKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYD-KKGPQIFKVDSEGDRCQLKVCSV 199

Query: 713 G-GSGSSYXL 739
           G GS ++Y +
Sbjct: 200 GSGSLNAYGI 209



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 690 CSAKRCQLGAPDPPTXYGYVDANFKPNMTKEEAKNL 797
           C  K C +G+      YG +D ++KP MT +EA+ L
Sbjct: 192 CQLKVCSVGSGSL-NAYGILDNHYKPKMTDDEARKL 226


>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
 Frame = +2

Query: 362 GVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKMEL 541
           G+V+ A+ +        + +T+K+ +++D I C  +G  AD   + + + +    ++   
Sbjct: 42  GIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSY 101

Query: 542 GDPPLVETAAAIFRELCYNYRDSLMAG--------ILVAGWDKKKGAQIY-SIPIGGMVQ 694
           G+   VE    + + LC   +     G        +L  GWDK  G Q+Y S P G    
Sbjct: 102 GEEMPVE---QLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTG 158

Query: 695 RQAVSIGGS 721
            +A  IG +
Sbjct: 159 WKATCIGSN 167


>Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical
           protein F39H11.5 protein.
          Length = 236

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 317 PHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQAI 496
           P  TGTS++A ++  GVV+  D   + G     +   +  K+ D +     G  AD   +
Sbjct: 13  PTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWL 72

Query: 497 ADIV 508
            +++
Sbjct: 73  QNVI 76


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 6/140 (4%)
 Frame = +2

Query: 314 APHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSAADTQA 493
           A +ST  + +A +     VI    R      +A+ VT  + +I+  + CC  G   D + 
Sbjct: 31  AINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS-VYQISQSVGCCAIGMIPDAKF 89

Query: 494 IADIVTYHLNFHKMELGDPPLVETAAAIFRELCYNYRD-----SLMAGILVAGWDKKKGA 658
                       K + G     E  A    +L   Y       SL   +L   +D +KG 
Sbjct: 90  QIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGP 149

Query: 659 QIYSI-PIGGMVQRQAVSIG 715
           ++Y + P G     + VS+G
Sbjct: 150 EVYRVDPAGYYRGMKGVSVG 169


>Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical
           protein F02H6.7 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 569 AAIFRELCYNYRDSLMAGILVAGW-DKKKGAQIYSIPIG 682
           A+ FRE  Y+Y   L     VAGW DK    +I   P G
Sbjct: 248 ASNFRESFYSYNYKLEKDSAVAGWIDKAGNCEIADFPTG 286


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 8/126 (6%)
 Frame = +2

Query: 428 KLTKITDQIYCCRSGSAADTQAIADIVTYHLNFHKMELGDP----PLVETAAAIFRELCY 595
           K+ +I+  I C  SG   D + +          ++M  G+      LV   AA+ +E   
Sbjct: 60  KVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQ 119

Query: 596 NYR-DSLMAGILVAGWDKKKGAQI--YSIPIGGMVQRQAVSIGGSGSSYXLWLR*RQFQA 766
           +       A +L+AGWDK  G  +     P G     +A ++G +  +   +L  R  +A
Sbjct: 120 SGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEA 179

Query: 767 -QYDQG 781
            + D G
Sbjct: 180 LELDDG 185


>AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome alpha
           subunit protein 6 protein.
          Length = 260

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +2

Query: 593 YNYRDSLMAGILVAGWDKKKGAQIYSIPIGGMVQRQAVSIGGSGSSYXLWL 745
           Y  R     GIL+AG+DK     I + P   +V     SIG    S   +L
Sbjct: 122 YYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYL 172


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/99 (23%), Positives = 36/99 (36%)
 Frame = +2

Query: 299 PEWMSAPHSTGTSIMACEFDGGVVIGADSRTTTGAYIANRVTDKLTKITDQIYCCRSGSA 478
           P W+    S   +  +C++D       D     G Y        L ++ + +Y   SGS 
Sbjct: 79  PYWLGIKCSLSGNPASCQWD-------DQSGNAGGYNGFAPGYPLVEVGNCVYVPTSGSF 131

Query: 479 ADTQAIADIVTYHLNFHKMELGDPPLVETAAAIFRELCY 595
           A      D  T  LNF        P+ +T +  +   CY
Sbjct: 132 AGKWLSGDCNTMSLNFICETAPTSPITDTCSFQYNGNCY 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,751,339
Number of Sequences: 27780
Number of extensions: 394793
Number of successful extensions: 840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)