Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N16
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.6  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   4.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   4.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   4.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   4.6  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.1  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +3

Query: 168 NTNNFHYNEMHLSNHK*LIFFPVYYL 245
           N NN++YN  + +N+K  +++ + Y+
Sbjct: 100 NYNNYNYNNNNYNNYK-KLYYNINYI 124


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 NTNNFHYNEMHLSNHK*LIFFPVYYL 245
           N NN++ N  + +N+K L ++ + Y+
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINYI 118


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 NTNNFHYNEMHLSNHK*LIFFPVYYL 245
           N NN++ N  + +N+K L ++ + Y+
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINYI 118


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 NTNNFHYNEMHLSNHK*LIFFPVYYL 245
           N NN++ N  + +N+K L ++ + Y+
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINYI 118


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 168 NTNNFHYNEMHLSNHK*LIFFPVYYL 245
           N NN++ N  + +N+K L ++ + Y+
Sbjct: 93  NYNNYNNNNYNNNNYKKLQYYNINYI 118


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 108 IKALN*GFRYYSHNLQMTLQNTNNFHYNEMHLSNHK*LIFFPVYY 242
           I +L+  + Y ++N      N    HYN  ++      + FPVYY
Sbjct: 315 ISSLSNNYNYNNYN-----NNYKPLHYNINYIEQIPVPVPFPVYY 354


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 281 YSDPCLPEWMSAPH 322
           +S+ CLPE +  PH
Sbjct: 432 FSESCLPEEILCPH 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,448
Number of Sequences: 438
Number of extensions: 5551
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)