Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N15
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 29 0.68
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 29 0.68
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 29 1.2
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 27 2.8
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 27 3.6
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 3.6
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.8
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 6.4
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 6.4
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 6.4
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 26 6.4
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 26 8.4
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 29.5 bits (63), Expect = 0.68
Identities = 23/104 (22%), Positives = 45/104 (43%)
Frame = +1
Query: 280 DLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSH 459
D+ + I +HK H VE + ++ S +RK + + + + N+H
Sbjct: 26 DISNFFISSASHKSEH----VEVSQSSSDSKNVDGRSTSEKRKVES--VKLVDESKHNNH 79
Query: 460 KSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTST 591
G ++++ +IVS+ K T + + S + +SG ST
Sbjct: 80 DDTGTQNVERENNIVSEAKKQKTLGSSSSSSDAVSSNNDSGAST 123
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 29.5 bits (63), Expect = 0.68
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Frame = +1
Query: 280 DLGDLIIERRN----HKVPHD------LRNVENPSQRPEHRD-PQDYSALNERKSQDKHT 426
DL D + E+RN H HD +RN+E+ + + E D D +NE++S DK
Sbjct: 33 DLNDSLDEQRNAYNEHCKNHDQQPSQQVRNMEDEANQYEQTDSSSDQEVMNEKQSLDKEN 92
Query: 427 EN-LIPNLTN 453
N IP+ N
Sbjct: 93 RNDNIPHENN 102
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +1
Query: 301 ERRNHKVPHDLRNVENPSQRPEHRDPQD---YSALNERK----SQDKHTENLIPNLTNSH 459
++ +HK P D + + P + H+ P+D + +++ ++KH E N+ +SH
Sbjct: 379 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQSSH 438
Query: 460 K 462
+
Sbjct: 439 E 439
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 301 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKH 423
++ +HK P D + + P + H+ P+D K ++ H
Sbjct: 361 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 401
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 301 ERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKH 423
++ +HK P D + + P + H+ P+D K ++ H
Sbjct: 370 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 410
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 27.5 bits (58), Expect = 2.8
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 271 NIPDLGDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLT 450
N DL DL + VP +N E EH+ + S NER D + +LI +
Sbjct: 23 NFDDLDDLDDILDDLDVPSAFKN-EEKKNIDEHKQTGNTSKENERIKNDDNLNSLIQEMM 81
Query: 451 NSHKSY-GYTGID 486
+ + G +G+D
Sbjct: 82 SKFEDLGGPSGLD 94
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 481 IDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVXKIIYVQTDGL 636
+ K + + Q + A +GN SKE+ SEN + ++Y + D +
Sbjct: 15 LKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNGEMEDETMLVYTEEDNI 66
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 713 VPLYYIVKPNNFNAANNLEQSTILPQTSALNNDASYIIRYTNKQPNEF 856
+ ++ I ++ A N + I+P NN A Y+ + NK+P F
Sbjct: 250 INIHNIRATGSYIAGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAF 297
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 271 CSFHQENLHHNNHSRFRSHITVFEDSL 191
CS +++ L H +H + HI + E +L
Sbjct: 257 CSINKDALTHRSHESLQQHIELLESTL 283
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 731 VKPNNFNAANNLEQSTILPQTSALNNDASYIIRYTNKQPNEFXNV 865
+KP +FNA N+ Q+T+ L +SY+ + P NV
Sbjct: 614 LKPLSFNAVNSYVQATLHRTDDGLARFSSYVYHISKGVPLLVRNV 658
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +1
Query: 295 IIERRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPNLTNSHKS 465
++E+R + + D ++ E + HR QD S ER ++H+ + + S+++
Sbjct: 153 LMEKRKYSLDSDRKSKERRHRDRHHRSNQDRS--RERSDNEQHSSDKREHSRRSYRN 207
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 368 IATLKITRLLMNESLRISILKI*YLT*QIVINPMVTLV*I-RTSLLLVKTKWRLQMIMGI 544
++ L + N LR + +I Y Q + L+ + RTS V T+W L +M
Sbjct: 618 VSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRSELLLDVVRTSK--VATRWLLPALMAF 675
Query: 545 YIKVKNLIPKTQ 580
YI++++ TQ
Sbjct: 676 YIEIESTGQSTQ 687
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 6.4
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +1
Query: 427 ENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKESHSENSGTSTQDTVX 606
E L+ + SH+ Y YT + KD Q KV + SH + T+ D+
Sbjct: 286 EKLLQGIQQSHQPYHYTNV-KDSQGSHQTKVTIEEN-----MEAPSHQAANRTTLTDSPL 339
Query: 607 KIIYVQTDGLQD 642
I+ +T L D
Sbjct: 340 GIVEDETTILTD 351
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 424 TENLIPNLTNSHKSYGYTGIDKDESIVSQDKVAFTNDNG 540
T+N IP LT ++YG + D S V + + NG
Sbjct: 211 TDNFIPFLTPKRQAYGQSSSRADRSSVRRSQSFKNRRNG 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,498,434
Number of Sequences: 5004
Number of extensions: 73604
Number of successful extensions: 243
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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