Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N15
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   5.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   5.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = -3

Query: 540 PIIICKRHFVLTNNRLVLIYTSVTIGFMTIC*VRY*IFSMLILRLSFIKSRVILRVAMFW 361
           P +I K H++ T   L LI +S+ + ++ +   ++  FS     L   ++  ILR+A   
Sbjct: 157 PKLIAK-HYLRTWFFLDLI-SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLL 214

Query: 360 SLTWILDVAKVMRY 319
           SL  +L +++++RY
Sbjct: 215 SLVRLLRLSRLVRY 228


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = -3

Query: 540 PIIICKRHFVLTNNRLVLIYTSVTIGFMTIC*VRY*IFSMLILRLSFIKSRVILRVAMFW 361
           P +I K H++ T   L LI +S+ + ++ +   ++  FS     L   ++  ILR+A   
Sbjct: 157 PKLIAK-HYLRTWFFLDLI-SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLL 214

Query: 360 SLTWILDVAKVMRY 319
           SL  +L +++++RY
Sbjct: 215 SLVRLLRLSRLVRY 228


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = -3

Query: 540 PIIICKRHFVLTNNRLVLIYTSVTIGFMTIC*VRY*IFSMLILRLSFIKSRVILRVAMFW 361
           P +I K H++ T   L LI +S+ + ++ +   ++  FS     L   ++  ILR+A   
Sbjct: 157 PKLIAK-HYLRTWFFLDLI-SSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRLAKLL 214

Query: 360 SLTWILDVAKVMRY 319
           SL  +L +++++RY
Sbjct: 215 SLVRLLRLSRLVRY 228


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/47 (19%), Positives = 23/47 (48%)
 Frame = +1

Query: 304 RRNHKVPHDLRNVENPSQRPEHRDPQDYSALNERKSQDKHTENLIPN 444
           +R+H + +   ++++ + +  HR  Q      +R+ Q +    L P+
Sbjct: 139 QRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLRPD 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,076
Number of Sequences: 438
Number of extensions: 5050
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)