Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N14
         (1463 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1; ...    36   2.7  
UniRef50_Q9LMQ1 Cluster: F7H2.17 protein; n=2; Arabidopsis thali...    34   8.1  

>UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus torques ATCC 27756|Rep: Putative
           uncharacterized protein - Ruminococcus torques ATCC
           27756
          Length = 159

 Score = 35.9 bits (79), Expect = 2.7
 Identities = 23/52 (44%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 617 FFFXPPPXX--PPXFFFFXXKKI-XXKXXGGGGXXPXXXXXXKKXFFFXXXK 471
           FFF PPP    PP FFFF    +   K  GGGG  P      KK  FF   K
Sbjct: 94  FFFFPPPQQNPPPFFFFFLGFFLFFFKKRGGGGFSP--PPPKKKKIFFPPPK 143



 Score = 34.3 bits (75), Expect = 8.1
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = -2

Query: 616 FFFXPPPXXPPXFFFFXXK--KYXXXXXGGGGXPQXXXXXXKXFF 488
           FFF PP   PP FFFF      +     GGGG         K FF
Sbjct: 95  FFFPPPQQNPPPFFFFFLGFFLFFFKKRGGGGFSPPPPKKKKIFF 139


>UniRef50_Q9LMQ1 Cluster: F7H2.17 protein; n=2; Arabidopsis
           thaliana|Rep: F7H2.17 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 1006

 Score = 34.3 bits (75), Expect = 8.1
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -1

Query: 638 PPPXPXXFFFXPPPXXPPXFFFF 570
           PPP P      PPP  PP FFFF
Sbjct: 150 PPPPPSPLVPSPPPPSPPPFFFF 172


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.317    0.153    0.498 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,396,553
Number of Sequences: 1657284
Number of extensions: 2823597
Number of successful extensions: 8386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7546
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 154456038925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)