Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N13
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 56 9e-09
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 54 4e-08
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 54 4e-08
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 50 3e-07
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 48 2e-06
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 46 6e-06
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 46 1e-05
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 45 1e-05
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 44 2e-05
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 44 4e-05
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 42 1e-04
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 39 0.001
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 37 0.005
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.010
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 36 0.010
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 35 0.018
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 34 0.032
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 33 0.042
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 33 0.042
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.056
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 32 0.097
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 32 0.097
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 31 0.30
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.39
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 27 2.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.7
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 4.8
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 6.4
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 26 6.4
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.4
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 8.5
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 8.5
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 55.6 bits (128), Expect = 9e-09
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +3
Query: 306 PPPASKEAVQKLQDVV-IENQKKGCPICLKNLEAGEKVKKMP-CNHIFHPRCILTWLDKT 479
PP AS++ ++K V + C +CL N E ++ +++ CNH FH CI WL +
Sbjct: 501 PPVASQKDLEKAGGVFPFSGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSS 560
Query: 480 -NSCPFCR 500
NSCP CR
Sbjct: 561 QNSCPLCR 568
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 53.6 bits (123), Expect = 4e-08
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 375 CPICLKNL-EAGEK-VKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMP 512
CPIC ++ E EK KMPC HIF C+ WL+ +CP CR E+P
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 53.6 bits (123), Expect = 4e-08
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWL-DKTNSCPFCRHEMP 512
C ICL++ G+KV +PC H FH CI W+ D ++CP C E+P
Sbjct: 321 CVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACPTCNTEVP 367
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 288 AEWPSLPPPASKEAVQKLQ----DVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRC 455
A+ + P PA ++ + K++ + +++ C IC++ + + V ++PC H FH C
Sbjct: 363 AQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGECTICMEMFKINDDVIQLPCKHYFHENC 422
Query: 456 ILTWLDKTNSCPFCR 500
I WL +C CR
Sbjct: 423 IKPWLRVNGTCAICR 437
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 351 VIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN-SCPFCRHE 506
++E+++ C IC + + ++ +PC H+FH +CI TW+ SCP C +
Sbjct: 197 LLEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNED 249
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 46.4 bits (105), Expect = 6e-06
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 378 PICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHE 506
P + + G ++ K+PC H FH C+ +W N+CP CR E
Sbjct: 39 PASISSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPLCRTE 81
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 45.6 bits (103), Expect = 1e-05
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 375 CPICLKNLEAGEKVKKMP-CNHIFHPRCILTWLDK-TNSCPFCR-HEMPTDDE 524
C ICL+ G+ +K+ C H FH CI WL NSCP CR H + T E
Sbjct: 766 CLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRAHGVTTQAE 818
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +3
Query: 366 KKGCPICL-KNLEAGEKVKKMPCNHIFHPRCILTWLDKTNS-CPFCRHEMPTDDEN 527
++ C ICL + E +++PC+HIFHP CI +L K + CP C+ + EN
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCPLCKQSVTNMLEN 550
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 44.4 bits (100), Expect = 2e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 417 KKMPCNHIFHPRCILTWLDKTNSCPFCRHEM 509
K++PC HI H C+ WL++ +CP CR +
Sbjct: 324 KRLPCGHILHFHCLRNWLERQQTCPICRRSV 354
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 43.6 bits (98), Expect = 4e-05
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 426 PCNHIFHPRCILTWLDKTNSCPFCRHEMP 512
PC+H++H +C+L W++ + CP CR +P
Sbjct: 646 PCHHLYHRQCLLQWMETRSICPVCRCHLP 674
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 375 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMPT 515
CPIC EA ++ C H + C+L WL ++ SCP CR ++ T
Sbjct: 85 CPICT---EALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYT 128
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 366 KKGCPICLKNLEAGEKVKKMPCNHI-FHPRCILTWLDKTNSCPFCRHEM 509
++ C ICL+ + G + + PC H F CI W+D++ +CP C+ +
Sbjct: 18 RRDCVICLQ--KDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPICKRHV 64
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 36.7 bits (81), Expect = 0.005
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 321 KEAVQKLQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLD---KTNSCP 491
KE K Q VV +Q+ C+ L++ E + PC HIF CIL+ L T CP
Sbjct: 186 KEEPSKKQ-VVPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCP 244
Query: 492 FCRHEM 509
CR ++
Sbjct: 245 VCRRKV 250
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 35.5 bits (78), Expect = 0.010
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 231 HLLHFARFLIDSGLDRTGAAEWPS-LPPPASKEAVQKLQDVVIENQKKGCPICLKNLEAG 407
H+LH + I ++ + ++ L P+SK ++ + C +CL+ +++
Sbjct: 162 HVLHIDKVNIKYPMESSDSSSTEQQLVGPSSKPFASTTPALI---ELPTCVVCLERMDSS 218
Query: 408 -EKVKKMPCNHIFHPRCILTWLDKTNSCPFCRH 503
+ + C H FH C+ W +SCP CR+
Sbjct: 219 ITGLITIVCQHTFHCPCLQKW--GNSSCPVCRY 249
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 35.5 bits (78), Expect = 0.010
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 429 CNHIFHPRCILTWLDKTNSCPFCRHE 506
CNH FH CI WL+ N CP E
Sbjct: 74 CNHAFHFHCISRWLNTRNVCPLDNRE 99
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 34.7 bits (76), Expect = 0.018
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 357 ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCR 500
E +K C +C++ + + C HIF CI W K + CP CR
Sbjct: 251 EGNRK-CSLCMEFIHCPAATE---CGHIFCWSCINGWTSKKSECPLCR 294
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 33.9 bits (74), Expect = 0.032
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Frame = +3
Query: 375 CPICLKNLEAGEKVKKM---PCNHIFHPRCILTWLDKTNS--CPFCR 500
C IC L + C H FH C+ W +NS CP CR
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCR 1604
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 33.5 bits (73), Expect = 0.042
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +3
Query: 294 WPSLPPPASKEAVQKLQDVVI----ENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCIL 461
W P + +++Q++V+ E+ C ICL + + + PC+H +H +CI
Sbjct: 161 WKIKLSPYNLNEFKRMQELVLCGSSESGPPECCICLMPVLPCQALFVAPCSHSYHYKCIR 220
Query: 462 TWLDKTN---SCPFCR 500
L++++ SC CR
Sbjct: 221 PTLNESHPYFSCFICR 236
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 33.5 bits (73), Expect = 0.042
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Frame = +3
Query: 306 PP--PASKEAVQKLQDVVIENQKKGCPICLKNL-EAGEKVKKMPCNHIFHPRCI-----L 461
PP PAS+E + + +KKGC C L E+G ++ C+ +H +C+
Sbjct: 1071 PPMEPASRETSPDSEGRLTIRKKKGCIFCFCRLPESGVMIECEICHEWYHAKCLKMSKKK 1130
Query: 462 TWLDKTNSCPFC--RHEMP 512
D+ +CP C R E+P
Sbjct: 1131 LRQDEKFTCPICDYRVEIP 1149
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 33.1 bits (72), Expect = 0.056
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 339 LQDVVIENQKKG--CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFCRHEMP 512
++D++ EN + C IC L + V PC H F C++ L ++ CP CR +P
Sbjct: 155 MEDLLQENVSRELECQICFGMLY--DPVVS-PCGHTFCGPCLMQALTQSPQCPTCRFGLP 211
Query: 513 T 515
+
Sbjct: 212 S 212
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 32.3 bits (70), Expect = 0.097
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 375 CPICLKNL-EAGEKVKKMPCNHIFHPRCILTWLDKTNSCPFC 497
CPIC + + + E+V + C+H H RC ++ CP C
Sbjct: 271 CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTC 312
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 32.3 bits (70), Expect = 0.097
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 429 CNHIFHPRCILTWLDKTNSCPFCRHEM 509
C H++ C+ WL ++SCP C+ ++
Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = +3
Query: 429 CNHIFHPRCILTWLDKTNS---CPFCRHEMPTDD 521
C HIFH CI WL + S CP R D
Sbjct: 52 CKHIFHAHCIQNWLATSGSQGQCPMDRQTFVVAD 85
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 30.3 bits (65), Expect = 0.39
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = +3
Query: 348 VVIENQKKGCPICLKNLEAGEKVKKM-PCNHIFHPRCILTW----LDKTNS----CPFCR 500
V ++N+ C +C + + C H+FH CI W +++ N CP+C+
Sbjct: 188 VELKNRLYECSVCTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCPYCQ 247
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 339 IFVLPLSMQAEVSLATPLHQFDLS 268
IF+ P S+Q + +ATP H F LS
Sbjct: 242 IFMAPKSLQYDFMIATPKHPFVLS 265
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 357 LLQHLVIFVLPLSMQAEVSLATPLHQF 277
++QH I + PLS+Q E LAT L +
Sbjct: 2342 VIQHFEINLFPLSLQIEQELATKLFAY 2368
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 420 KMPCNHIFHPRCILTWLDKTNSCPFC 497
K PC + +P C + K CPFC
Sbjct: 57 KAPCKAVLNPYCHIDTRAKFWICPFC 82
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/62 (22%), Positives = 26/62 (41%)
Frame = +3
Query: 303 LPPPASKEAVQKLQDVVIENQKKGCPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTN 482
+ P A+ ++ L+ + P + GE + + + + HPR LDKT+
Sbjct: 532 ISPDAALQSDGPLKKAKEPEESSITPTTPPSFNVGESLSRRSASPLQHPRTSPDMLDKTS 591
Query: 483 SC 488
C
Sbjct: 592 PC 593
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 375 CPICLKNLEAGEKVKKMPCNHIFHPRCILTWLDKTNSCP 491
CP+ L+ + + CNH + IL+ L+ T CP
Sbjct: 179 CPLTLQPIV--HPILSTACNHFYEKDAILSLLNPTCVCP 215
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -3
Query: 333 VLPLSMQAEVSLAT-----PLHQFDLSQNL*EILQNVRDDLVVPHH 211
+LP M+ E ++ + L + L+ L EI Q +R VVPHH
Sbjct: 82 MLPSQMELETAVKSCMTMEQLELYSLNVRLEEITQKLRTGDVVPHH 127
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 558 LVSLLSCRLHNFRHQ*ASHVYKTGMSLS 475
L+SL S +LH H AS V + G+SLS
Sbjct: 427 LISLSSKQLHPRHHNTASIVVQVGVSLS 454
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 429 CNHIFHPRCILTWLDKTNSCPFCR 500
C+H F CI +L + CP CR
Sbjct: 44 CSHTFCSFCIRDYLREHPMCPACR 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,751
Number of Sequences: 5004
Number of extensions: 66772
Number of successful extensions: 208
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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