Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N12
         (989 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    31   0.90 
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    30   2.7  
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    29   3.6  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    29   4.8  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    29   4.8  
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to...    29   4.8  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   6.3  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   6.3  
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    29   6.3  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    29   6.3  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   8.3  

>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -3

Query: 465 SCVIPLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAE 292
           S  IP+ L IT++PP +     + A++P              + N+L P+  R I   AE
Sbjct: 260 SRTIPVKLKITIIPPKARRTIPSEADKP-------THTDELNFMNKLPPKRRRTIPSEAE 312

Query: 291 KTSHTSXLNLKHKM 250
           K +HT  LN  +K+
Sbjct: 313 KPTHTDELNFMNKL 326


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 741 PTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 625
           P   A R RH+ R  +GG+ S  R  R R +  GA RG+
Sbjct: 571 PARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 643 LVRSPVPTLPLTGYLSAFLPSGSVAL 720
           L+R    +LP T Y  +FLPS +VAL
Sbjct: 15  LLRISTASLPATNYFDSFLPSDAVAL 40


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
            profile PF05182: Fip1 motif
          Length = 1192

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = -3

Query: 816  RSGRAERGFVHTAQLGANDLH--RTEIPTA*AMRKRHASRREKGGQVSGKRQGRNR 655
            + G      V T   G ND    R+EIP      KRH      G ++   ++GR +
Sbjct: 998  KQGEQNGSSVVTGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKRGRTK 1053


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 544 RPPDEHHKNRRSSQRW 591
           RPPDEH  NR  S+ W
Sbjct: 667 RPPDEHRLNRADSKHW 682


>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 356

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -3

Query: 531 KRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAA 394
           +R++R  FT   +LLA  S +L  VIP IL IT L   S     AA
Sbjct: 54  QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 352  PLPRSLTRCARSFGCGERYQLTQRR 426
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 352  PLPRSLTRCARSFGCGERYQLTQRR 426
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 498  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 400
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 498  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 400
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 343 PIRKPPLPARWPIH*CRKNLPHL 275
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,461,679
Number of Sequences: 28952
Number of extensions: 359086
Number of successful extensions: 949
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2411911104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)