Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N10
         (847 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08WR9 Cluster: Putative uncharacterized protein; n=1; ...    34   5.2  
UniRef50_O50532 Cluster: Putative integral membrane protein; n=1...    33   9.0  
UniRef50_Q57UN5 Cluster: Putative uncharacterized protein; n=3; ...    33   9.0  

>UniRef50_Q08WR9 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 1037

 Score = 33.9 bits (74), Expect = 5.2
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +3

Query: 273 RVHQSGALTHRCAGTSPVRFLQFPNEKCRTNSGFITRHGCVVRDTVAARLPPSSHYHTVG 452
           +VH   A  H  AG SP         +     GF  +H C++ D V  R+ P   +H VG
Sbjct: 598 QVHVLAARGHHHAGVSPEAVGLEHAIRGELADGFDLQHTCLLEDAVEQRVQPGREHHGVG 657


>UniRef50_O50532 Cluster: Putative integral membrane protein; n=1;
           Streptomyces coelicolor|Rep: Putative integral membrane
           protein - Streptomyces coelicolor
          Length = 393

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +3

Query: 285 SGALTHRCAGTSPVRFLQFPNEKCRTNSGFITRHGCVVRDTVAARLPPSSHYHTVGWYIY 464
           +GAL+   A  + V   Q      R     + R   +V  T AA L P++HY    W ++
Sbjct: 24  AGALSATIALAAAVAGPQVSRLVDRYGQRRVLRPATLVSLTAAAVLLPAAHYGWPDWVLF 83

Query: 465 RLIIGLVCVTIMRQVV--VWQALADG 536
              +G+ CV  +  +V   W AL  G
Sbjct: 84  AACVGIGCVPSLGAMVRARWAALYRG 109


>UniRef50_Q57UN5 Cluster: Putative uncharacterized protein; n=3;
           Trypanosoma|Rep: Putative uncharacterized protein -
           Trypanosoma brucei
          Length = 755

 Score = 33.1 bits (72), Expect = 9.0
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +1

Query: 151 VASGGLLVAHSTQLRASGTADRKFNARSSAHM*ISAHLQAKGFTKAA 291
           V  G LL  H T LRA  T  RK  +R  +H   SA+  A   T++A
Sbjct: 39  VLQGPLLTPHRTFLRAGATTIRKSGSRCFSHQQTSANCSAVSSTESA 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,328,498
Number of Sequences: 1657284
Number of extensions: 15485499
Number of successful extensions: 40826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40821
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74193458591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)