Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N10
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    29   1.1  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   5.8  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   7.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   7.7  

>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 222 QRKIERAYVNIGTFTSERVHQSGALTHRCAGTSPVRFLQFPNEK 353
           +R +E  YVNIG F +  V   G++  +      V F   P+ K
Sbjct: 153 KRSLESPYVNIGAFRTYPVGNDGSIRTKSRHHPSVLFKNLPSSK 196


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 198 LGHSRSKVQRKIERAYVNIGTFTSE 272
           L HS   ++ +IERA +NI   TSE
Sbjct: 218 LKHSTDLLEARIERANINISAQTSE 242


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 278 NPFACKCADIYICALDLALNFRSAVPEALS*VEWA 174
           NPFA  C D+   +LD    + S +P  L    WA
Sbjct: 825 NPFADDCRDVVFVSLDFGDTW-SRLPSNLEYCSWA 858


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 618 QDFILNLHKIIGPFALYD*CMYDLDML*SK 707
           +DFI++L    G  +L++ C+Y+ D L SK
Sbjct: 19  KDFIIDLSYKSGTASLFEACVYNGDFLRSK 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,257
Number of Sequences: 5004
Number of extensions: 62483
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)