Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N09
         (959 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
 Frame = +3

Query: 747 PRASPQXXXPPPPKIP--PNXXXPXPNPXGXXPPXXTXSSPPXXXP 878
           P +      P P + P  P    P PNP    PP     +PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSP-PNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 723 PSQGGXXPPRASPQXXXPPPPKIPPNXXXPXPNP 824
           P Q    P R SP      PP   P    P  NP
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 12/47 (25%), Positives = 14/47 (29%)
 Frame = +3

Query: 783 PKIPPNXXXPXPNPXGXXPPXXTXSSPPXXXPXXPXXXTPPPRKGSP 923
           P   P+       P    PP  +   PP   P  P    P     SP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 564 GRGXPPKSGETPGXNLGA 617
           G G PP++GE    NL A
Sbjct: 525 GNGDPPENGEAFAQNLYA 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,289
Number of Sequences: 438
Number of extensions: 3259
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)