Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N07
         (1045 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    29   1.1  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.3  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   5.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   7.6  

>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 23/90 (25%), Positives = 40/90 (44%)
 Frame = +2

Query: 167 SSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDVKQSLTLGTMNFKN 346
           SSE   L+EG +    +   +L+ Y+  +  G  GA     Y   DV  ++      FK 
Sbjct: 16  SSETSLLTEGPESDEEDEGPLLKQYRLKNMLGY-GA-CSTVYLAVDVSTNIEYAIKEFKK 73

Query: 347 IALYGTNEFRLNYVKADIGAMEAHAVMTLE 436
            +L    +FRL  ++ ++G+       T+E
Sbjct: 74  TSLRRREKFRLMQLEKELGSFNDMDSSTIE 103


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 231  WSIINSRIPRGCRELNYQIHTQFRTSNSH 317
            W +I +RIP+ C + +Y ++  +R   SH
Sbjct: 1437 WQVI-TRIPQYCHDTHYGVYDAYRDFRSH 1464


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +2

Query: 176 DEKLSEGEKKLSHNILAILEHYKQPDP--TGLPGAKLPDPYPV---PDVKQSLTLGTMNF 340
           D+ +S G   + HN +  ++H    DP  TGLP     D  P+    + + S+ +G   +
Sbjct: 265 DDSVSAGAAFIPHNPMDSIDHLDVNDPTATGLPVLPASDIDPLNLTGNTQDSMIIGQQTY 324

Query: 341 KNIALYGT 364
            +    GT
Sbjct: 325 PSHGSSGT 332


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 17/54 (31%), Positives = 20/54 (37%)
 Frame = +1

Query: 400  RSNGGPRRDDSRKIASTRQLHLRDVVQFGSGPVHCSHNRTEGDSERGPSSRARR 561
            RSNG  R +DSR     R  H     +  S       N  E D       RAR+
Sbjct: 1543 RSNGSNRGNDSRDADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRARQ 1596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,000
Number of Sequences: 5004
Number of extensions: 47225
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 547228964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)