Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N07
         (1045 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   3.7  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   4.9  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   4.9  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 185  LSEGEKKLSHNILAILEHYKQPDP 256
            LS GEK LS   L    HY +P P
Sbjct: 1187 LSGGEKTLSSLALVFALHYYKPSP 1210


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +1

Query: 481 FGSGPVHCSHNRTEGDSERGPSSRARR*NQSGKHRHGLIGQHLDEAFRS 627
           +G G  H SH+     +  G        + +  H H L  QH   AF S
Sbjct: 702 YGGGGHHLSHHHGGAAAATGHHHHQ---HHAAPHHHSLQQQHASSAFNS 747


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 460 VVAACLQFFESHHGVGLHCSDIGLNVI 380
           ++  C+ F + HH     CS++G+ +I
Sbjct: 437 LILMCISFLQQHHQKPNACSNLGVLLI 463


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,727
Number of Sequences: 2352
Number of extensions: 12466
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 115929918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)