Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N07
         (1045 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    32   0.59 
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    31   1.8  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      28   9.6  

>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 32.3 bits (70), Expect = 0.59
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +2

Query: 245 QPDPTGLPGAKLP--DPYPVPDVKQSLTLGTMNFKNIALYGTNEFRLNYVKAD-IGAMEA 415
           QP P  LPG + P   P P+P +     L  + ++ I +  TNE RL  +  D +  M  
Sbjct: 27  QPPPQDLPGLQDPPLTPLPLPPLLCPHPLSLLTWEGIQIPTTNECRLLGLHFDSMLCMRE 86

Query: 416 HAVMTLEKLQARGN 457
           H     ++LQ++ N
Sbjct: 87  HHAQIKKRLQSQLN 100


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 10/38 (26%), Positives = 25/38 (65%)
 Frame = +2

Query: 146 QEIPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPT 259
           +++PE+   + E++SE ++KL  ++  +++   +PD T
Sbjct: 20  KKVPEKAEPKKEEMSEEDQKLEEDLNLLVQRLSEPDTT 57


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 182  KLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDPYPVPDVK 310
            K S+GEKK+  N   + +    P P   P  + P+P P P V+
Sbjct: 2795 KNSKGEKKVKENTAPVQQ---APVPVSPPREETPEPTPSPPVR 2834


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 152 IPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDP 289
           +P  + S    +S  +  L+H  +A +     P P   P  KLPDP
Sbjct: 235 VPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDP 280


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 152 IPEEVSSEDEKLSEGEKKLSHNILAILEHYKQPDPTGLPGAKLPDP 289
           +P  + S    +S  +  L+H  +A +     P P   P  KLPDP
Sbjct: 235 VPPPIPSRAPVMSPVQSPLTHPPVAPMPRCPPPLPPRTPSMKLPDP 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,507,728
Number of Sequences: 27780
Number of extensions: 276416
Number of successful extensions: 783
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2772493070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)