Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N06
(1084 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 34 0.23
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.2
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 2.1
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 30 2.8
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 30 2.8
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502... 29 4.8
03_02_0436 + 8427018-8427707,8429005-8429544 29 4.8
03_01_0515 - 3864796-3865425 29 4.8
11_06_0016 - 19284810-19284926,19285527-19286879 29 6.4
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 29 6.4
03_05_0067 - 20460206-20460703,20461255-20461530 29 6.4
02_05_0686 - 30900748-30902167,30903442-30904742 29 8.5
01_06_0046 + 25943183-25943590 29 8.5
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 33.9 bits (74), Expect = 0.23
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPP-PXKXXKTXPPPP 529
PPP GGGG P + PP P + + PPPP
Sbjct: 6 PPPQAGVAGGGGAPPQWGAIPPPVPHQQQQYAPPPP 41
Score = 32.3 bits (70), Expect = 0.69
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP GGG P + PPP + PPP
Sbjct: 5 PPPPQAGVAGGGGAPPQWGAIPPPVPHQQQQYAPPP 40
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFX---PPPXKXXKTXPPPPPXXFFFXXGG 559
PPPP GG P F PPP PPPPP GG
Sbjct: 1150 PPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGG 1197
Score = 28.7 bits (61), Expect = 8.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP GG G P PP PPPP
Sbjct: 1185 PPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPP 1220
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP G P PPP + PPPPP
Sbjct: 62 PPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPP 97
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPPXXFFF--XXGGGG 565
PPPP P PPP PPPPP F + GGGG
Sbjct: 53 PPPPPQVIRVFAAAPP-----PPPAAFFAAVPPPPPPPFEYYPAVGGGG 96
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 30.3 bits (65), Expect = 2.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
P PP + G G P PPP PPPP
Sbjct: 634 PVPPPSMANGAGPVPPPIAVAPPPAPPIAGAAPPPP 669
>12_02_1007 -
25248653-25249078,25249956-25250021,25250108-25250260,
25250961-25251336,25252001-25252143
Length = 387
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 449 GGGGXXPXFFFFXPPPXKXXKTXPPPP 529
GGGG F PPP + PPPP
Sbjct: 60 GGGGGGASSFDQPPPPVSYHRLSPPPP 86
>03_02_0436 + 8427018-8427707,8429005-8429544
Length = 409
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +2
Query: 440 NXXGGGGXXPXFFFFXPPPXKXXKTXPPPPPXXF 541
N GGGG FF PP PPPPP F
Sbjct: 97 NLGGGGGQQSPFFPLLPP----LPPQPPPPPPFF 126
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 4.8
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP P PPP K+ PPPPP
Sbjct: 89 PPPPPPPAASPPPPPP----SPPPPSPVKSSPPPPP 120
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
P PP + G G P PPP PPPPP
Sbjct: 65 PMPPASAAAGDGAAPDQ---EPPPSPPPPPPPPPPP 97
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 562 PPPXXKKKXXGGGGGXG 512
PPP KK GGGGG G
Sbjct: 23 PPPPVSKKGGGGGGGGG 39
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 564 PPPPXXKKKXXGGGGG 517
PPPP KK GGGGG
Sbjct: 23 PPPPVSKKGGGGGGGG 38
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 467 PXFFFFXPPPXKXXKTXPPPPPXXFF 544
P + PPP + + PPPPP +F
Sbjct: 8 PQWAMGPPPPPQYFQAGPPPPPPQYF 33
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 8.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 428 PPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPP G P PPP K PPPPP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
>01_06_0046 + 25943183-25943590
Length = 135
Score = 28.7 bits (61), Expect = 8.5
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPPXXFFFXXGGG 562
PPPP P ++++ PPP PPP + GGG
Sbjct: 50 PPPPALPP-----PPPYYYYSPPPPAYYPGSYCPPPPAAYVQFGGG 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,317,759
Number of Sequences: 37544
Number of extensions: 342151
Number of successful extensions: 1878
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3234583292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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