Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N06
(1084 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 34 0.15
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 32 0.62
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.82
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.82
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.82
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 31 1.4
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 31 1.9
Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical p... 24 8.6
Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical pr... 24 8.6
Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical p... 24 8.6
Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical pr... 24 8.6
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 34.3 bits (75), Expect = 0.15
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP GG P PPP PPPPP
Sbjct: 84 PPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPP 119
Score = 29.9 bits (64), Expect = 3.3
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 428 PPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPP G P F PPP PPPPP
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPP 109
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.3 bits (70), Expect = 0.62
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPP--PPP 532
PPPP GG P PPP + +T PP PPP
Sbjct: 125 PPPPRKSRAGGSSPPP-----PPPPRVPRTPPPRSPPP 157
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.82
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPPXXFFF 547
PPPP GG P PPP K PPPPP F
Sbjct: 758 PPPPPPPPGGCPPPPP-----PPPPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.82
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPPXXFFF 547
PPPP GG P PPP K PPPPP F
Sbjct: 758 PPPPPPPPGGCPPPPP-----PPPPGGFKGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.82
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPPXXFFF 547
PPPP GG P PPP K PPPPP F
Sbjct: 341 PPPPPPPPGGCPPPPP-----PPPPGGFKGGPPPPPPPGMF 376
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 425 PPPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
PPPP G P + PPP PPPPP
Sbjct: 117 PPPPVQYQNQG---PQYIEAPPPPPSPPPPPPPPPP 149
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 428 PPPXNXXGGGGXXPXFFFFXPPPXKXXKTXPPPPP 532
P GGGG P PPP PPPPP
Sbjct: 21 PMAGGGGGGGGCAPAAPACAPPPPPMCGCAPPPPP 55
>Z75547-16|CAA99907.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 23.8 bits (49), Expect(2) = 8.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 425 PPPPXNXXGGGG 460
PPPP N GG G
Sbjct: 218 PPPPSNPYGGSG 229
Score = 23.0 bits (47), Expect(2) = 8.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 452 GGGXXPXFFFFXPPPXKXXKTXP 520
GGG P F PPP + P
Sbjct: 263 GGGVQPVSNFIPPPPNRHPNEPP 285
>Z74474-4|CAA98956.2| 445|Caenorhabditis elegans Hypothetical
protein K10C8.3a protein.
Length = 445
Score = 23.8 bits (49), Expect(2) = 8.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 425 PPPPXNXXGGGG 460
PPPP N GG G
Sbjct: 218 PPPPSNPYGGSG 229
Score = 23.0 bits (47), Expect(2) = 8.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 452 GGGXXPXFFFFXPPPXKXXKTXP 520
GGG P F PPP + P
Sbjct: 263 GGGVQPVSNFIPPPPNRHPNEPP 285
>Z75547-17|CAN99726.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 23.8 bits (49), Expect(2) = 8.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 425 PPPPXNXXGGGG 460
PPPP N GG G
Sbjct: 218 PPPPSNPYGGSG 229
Score = 23.0 bits (47), Expect(2) = 8.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 452 GGGXXPXFFFFXPPPXKXXKTXP 520
GGG P F PPP + P
Sbjct: 263 GGGVQPVSNFIPPPPNRHPNEPP 285
>Z74474-5|CAN99697.1| 432|Caenorhabditis elegans Hypothetical
protein K10C8.3c protein.
Length = 432
Score = 23.8 bits (49), Expect(2) = 8.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 425 PPPPXNXXGGGG 460
PPPP N GG G
Sbjct: 218 PPPPSNPYGGSG 229
Score = 23.0 bits (47), Expect(2) = 8.6
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 452 GGGXXPXFFFFXPPPXKXXKTXP 520
GGG P F PPP + P
Sbjct: 263 GGGVQPVSNFIPPPPNRHPNEPP 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,729,882
Number of Sequences: 27780
Number of extensions: 185507
Number of successful extensions: 671
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2908502164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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