Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N04
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     27   0.17 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   2.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   2.0  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   3.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   3.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 158 HSVDRLEQLFKETVGDQKEITREQFQKIVVSKNP 259
           H++ +L+++ +   GD+  +T  QFQ +V S +P
Sbjct: 148 HTLYKLDEIIERN-GDKPPLTYHQFQTVVASMDP 180


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 429 GXLQHVMRACMEENGMQF 482
           G L H   + M+ENG+QF
Sbjct: 312 GELGHCTASVMDENGLQF 329


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 839 SGHDDEAVRLSVLNASRHEQPKI 771
           S HD +AVR+S LN     + +I
Sbjct: 440 SAHDKQAVRMSALNVQPTSKGRI 462


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 437 QLPCVGLGRRHPSHKP*TRTGSCRQGSGPRT 345
           + PC  +GRR  S  P    G+C Q S   T
Sbjct: 58  EAPCDPVGRRLKSLAPLVLRGACPQCSPEET 88


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 437 QLPCVGLGRRHPSHKP*TRTGSCRQGSGPRT 345
           + PC  +GRR  S  P    G+C Q S   T
Sbjct: 58  EAPCDPVGRRLKSLAPLVLRGACPQCSPEET 88


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 231 NCSLVISF*SPTVSLKSCSSRSTLCLSKPTRGLLLLTVERN 109
           N +L I+  S T+SL +  S +  CL  P   ++L+  ERN
Sbjct: 874 NVALRITSMSVTISLSA--SVTIACLFSPKLYIILIRPERN 912


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 384 KNRILSSGLWPANLCTAAMNSWREMD 307
           KN+I+ S +W   + T     W E D
Sbjct: 69  KNQIMKSNVWLRFIWTDYQLQWDEAD 94


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 459 CTPSSRAAAXLCWIRPSPS 403
           C P+ R  + + W +P P+
Sbjct: 25  CQPTQRTMSKIQWRKPKPA 43


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 222 ENNFRRLSSLKIHSSQNGFSKYSMKTIR 305
           EN  R+  +L   S + GF  Y+M  IR
Sbjct: 122 ENETRQGLTLHYRSKRRGFVYYTMGQIR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,816
Number of Sequences: 438
Number of extensions: 5127
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)