Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N02
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 35 0.013
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.023
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 34 0.030
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 31 0.16
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.16
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.16
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 30 0.37
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.37
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 30 0.37
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 30 0.37
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.49
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 1.1
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 28 1.5
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 28 2.0
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 2.0
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.6
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 27 2.6
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 3.5
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 4.6
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 4.6
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 26 6.1
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 6.1
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 8.1
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 8.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 8.1
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 8.1
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 26 8.1
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 8.1
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.1 bits (77), Expect = 0.013
Identities = 28/86 (32%), Positives = 40/86 (46%)
Frame = +3
Query: 576 ADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNN 755
A VVFER+ D A K G+ L+GR + + + T++ ++GG G
Sbjct: 144 AFVVFERERDLKVAYKASAGLMLNGRRIVVDVERG--RTVKGWLPRKLGGGLGGRHYTKE 201
Query: 756 PKRGGGGIRNQSNSGARGGNXXXRGG 833
R G R + +SG RGG RGG
Sbjct: 202 RPRRERGSRFRGDSGFRGG---YRGG 224
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.023
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 449 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
+L VSN+ F ++D D+K +F FG ++ + D RS
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRS 379
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 33.9 bits (74), Expect = 0.030
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +2
Query: 428 TITTGPTKLLVSNLDFGVSDSDIKELF-SEFGILKSASVHYDRSGRS 565
++ + +K++VSNL V+++ +KELF G K S+ Y +GRS
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRS 95
Score = 30.7 bits (66), Expect = 0.28
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 576 ADVVFERKADAVKAMKQYNGVPLDG-RAMNIQLATSEINTLRPEARNRIGGASVGGTIRN 752
A ++F R DA +A +QY G +DG R M +++ L A ++ T
Sbjct: 99 ATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNASATASK 158
Query: 753 N 755
N
Sbjct: 159 N 159
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 31.5 bits (68), Expect = 0.16
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = +2
Query: 206 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 361
R GGG+ R G GG GF G RGR RGG +S N +RG V
Sbjct: 444 RTGGGS-----RGGRGGFGGRGGFGGRGGFGGGRGRGRGG-ARSGNPNRGSV 489
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +3
Query: 603 DAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPKRGGGGIR 782
D+ K + NG + GR + +T R +R G GG + G GG R
Sbjct: 418 DSAKKCVEMNGHFIAGRPCRLDFSTP-----RTGGGSRGGRGGFGGRGGFGGRGGFGGGR 472
Query: 783 NQSNSGARGGN 815
+ GAR GN
Sbjct: 473 GRGRGGARSGN 483
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 565
+ V NL + SD ++ +LF++ G + A + Y+ +GRS
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRS 319
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 422 SGTITTGPTKLLVSNLDFGV--SDSDIKELFSEFGILKSASV 541
+ T T P L V NLD + + ++ELFS+FG +KS ++
Sbjct: 411 TSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTL 452
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 30.3 bits (65), Expect = 0.37
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGILK 529
L V NLDF +D+D+KE F + G ++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIR 255
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.37
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 699 PEARNRIGGASVGGTIRNNPKRGG-GGIRNQSNSGARGGNXXXRGG 833
P +R GG S GG N RGG GG R + G RGG RGG
Sbjct: 5 PGSRGGRGG-SRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49
Score = 29.5 bits (63), Expect = 0.65
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2
Query: 218 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
G GR R GRGG G R SGG RG +GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGG--RGGAKGG 70
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 720 GGASVGGTIRNNPKRGGGGIRNQSNSGARGGNXXXRGGA 836
GGA GG RGG G G+ GG +GGA
Sbjct: 33 GGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGA 71
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 206 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ 304
R G GR R GRGG +G R GG +
Sbjct: 40 RGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 30.3 bits (65), Expect = 0.37
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 404 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 562
R+ Q + T + + NLD +++ + +LF +FG + S S+ D++ +
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK 299
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 576 ADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSE 683
A VVF+ +A +A+K G PL G+ M IQ + S+
Sbjct: 71 AFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKSK 106
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.49
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 155 DQIEMALDDIIKANK---KTRIGGGAGRKFDANKRTGRGGGAGFRSNRSG--GVQRGRNR 319
D++ ++ D +I ++ K + G K N GRGG GFR R G G G +R
Sbjct: 100 DKVYLSGDKLIPLDRFLPKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSR 159
Query: 320 GG 325
GG
Sbjct: 160 GG 161
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +2
Query: 215 GGAGRKFDANKRTGRGGGA--GFRSNRSGGVQ---RGRNRGG 325
GG+ F N R G GGG+ GF GG + RG +RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 215 GGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGRNRGG 325
G AGR R GRGG GF N GG G +RGG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGF-GGGSRGG 169
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 723 GASVGGTIRNNPKRGGGGIRNQSNSGARGGN-XXXRGGA 836
G S GG N+ GGG R G+RGG+ RGG+
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGS 186
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFG 520
+ + NLDF +++ DI +FSEFG
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFG 55
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 194 NKKTRIGGGAGRK--FDANKRTGRGGGAGFRSNRSGGVQR 307
N+ GGG GR+ + + G G G+R+NR G R
Sbjct: 78 NRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQWR 117
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 224 GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 325
G + + N+ GGG G ++N GG + G + GG
Sbjct: 72 GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGG 105
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGILKS 532
L +SN+D VS++DIK LF + + +
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFISA 101
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 464 NLDFGVSDSDIKELFSEFGILKSASVHY 547
+LD V D DI+ LFS F I KS +Y
Sbjct: 473 SLDETVCDKDIQALFSIFNINKSVDQYY 500
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGILK 529
L VSNL G S S I LFS +G +K
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVK 27
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 440 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 562
GPT +++ NL G S D+ FG + + V+ D G+
Sbjct: 98 GPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVN-DSQGK 137
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGIL 526
LLV N +G S ++ LFS FG L
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGEL 532
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 452 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 574
L V L+ D D++ +FS FG + S V D+ +G SL Y
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQY 287
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 714 RIGGASVGGTIRNNPKRGGGG 776
R GGAS GG R++P+ GG
Sbjct: 882 RRGGASAGGVSRDSPRYSRGG 902
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/89 (23%), Positives = 33/89 (37%)
Frame = +2
Query: 158 QIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKS 337
Q + L D +K +GG + + RG G R G + RNR G
Sbjct: 48 QSDFNLFDRQFTKRKFDVGGRRVKGTEGKPGVSRGVGEELRRRTIGAELKKRNRSGAIID 107
Query: 338 TNYSRGDVNSTWKHDMFNDFGERKLQRNS 424
+ + + + + M F R+ QR S
Sbjct: 108 RRFGENNPHLSVEEKMLERF-SREQQRRS 135
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 582 VVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINT 692
+ ++RK DA +A+ +G DGR + T++ T
Sbjct: 170 ITYQRKEDAARAIAAIDGSVSDGRHLRASYGTTKYCT 206
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 678 SEINTLRPEARNRIGGASVGGTIRNNPKRGGGGIRNQSNSGARGG 812
S N+LRP SV G + KR +RN S S + GG
Sbjct: 1572 SRSNSLRPMLARLSDSKSVHGEEGGSGKRSVSSLRNVSPSESTGG 1616
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 591 ERKADAVKAMKQYNGVPLDGRAMNIQLATSE 683
+RKA A +AM NG +DGR + + A S+
Sbjct: 157 DRKA-AEEAMNSLNGTEIDGRPIAVDWAVSK 186
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 8.1
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 218 GAGRKFDANKRTGRGGGAGFRSNR-SGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 394
G G F +N T G G+G +N SGG+ N T ST G + K F+
Sbjct: 282 GGGSAFGSNT-TNTGFGSG--TNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQK-PAFSG 337
Query: 395 FGERKLQRNSGTIT 436
FG N+GT T
Sbjct: 338 FGSTTNTTNTGTGT 351
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 455 LVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 574
LV FGV++ D E+ E K + YD+ GR Y
Sbjct: 660 LVWRRHFGVNNMDPDEIQEENATGKQVLLGYDKDGRPCLY 699
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 714 RIGGASVGGTIRNNPKRGGGGIR 782
R+G + G TIRN P R G+R
Sbjct: 30 RLGAPATGITIRNQPIRSYSGLR 52
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 227 RKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVN 364
R+ N T G+G R R RGR RGG + Y+R N
Sbjct: 367 RERSLNMETFGVAGSGNRGRRG----RGRGRGGRGRGRGYARNQYN 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,691
Number of Sequences: 5004
Number of extensions: 65252
Number of successful extensions: 240
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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