Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_N01
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    30   0.37 
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    28   2.0  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   8.0  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 292 SHDGSSVVAADDNLDINARVEEERRRMQPTKLESFFAITK 411
           S    +V  A+  +D++A   E+RRR + +KL SFFA  K
Sbjct: 368 SGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQK 407


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
           + +NGSI L   I+    SP LTI K LL++ SLL
Sbjct: 78  INSNGSICLD--ILRDQWSPALTISKVLLSICSLL 110


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 682 SLSKHNTIICVKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTS 810
           S S+H        N S++LH    P  ++P +  D   +A+TS
Sbjct: 188 SSSRHTADAQSITNASVHLHNSSSPLNRTPSVISDTLAVAITS 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,080
Number of Sequences: 5004
Number of extensions: 65318
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)