Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_N01
(867 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006615-4|AAK68233.2| 602|Caenorhabditis elegans Hypothetical ... 72 5e-13
Z50795-2|CAA90663.1| 618|Caenorhabditis elegans Hypothetical pr... 66 2e-11
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 29 3.3
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 29 3.3
Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ... 28 7.5
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 28 9.9
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 28 9.9
AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical ... 28 9.9
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 28 9.9
>AC006615-4|AAK68233.2| 602|Caenorhabditis elegans Hypothetical
protein C36B7.6 protein.
Length = 602
Score = 72.1 bits (169), Expect = 5e-13
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Frame = +2
Query: 440 YFITSMFRQPSAPKTDINNPSSAP---RAPAVNMFANGTILDMYCYL--SEQEFNTNFDN 604
YFI++M + ++ N+ ++A P+VN+F G I D Y YL SE+ FN +F+N
Sbjct: 39 YFISTMLGKMGGSQSKTNSTAAANVKGMPPSVNLFPPGQIYDFYLYLDDSEERFN-HFEN 97
Query: 605 SNLIWQHSGLVYGDWYSGPNGDGSYSHSASI-TPSFALKIMDPFIYMFIL 751
L Q GL YGDW GPN DGSY + TP L+ +++ F++
Sbjct: 98 GFLFAQKKGLRYGDWTGGPNKDGSYVFEKTFPTPEVLLRNQSYYLHAFLV 147
>Z50795-2|CAA90663.1| 618|Caenorhabditis elegans Hypothetical
protein R166.2 protein.
Length = 618
Score = 66.5 bits (155), Expect = 2e-11
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 10/115 (8%)
Frame = +2
Query: 437 VYFITSM----FRQPSAPKTDIN-NPSSAPRA-PAVNMFANGTILDMYCYLSEQEFN-TN 595
+YF+ SM FR S+P D N S+A A+NMF N I D+Y Y+ + +
Sbjct: 33 IYFVVSMVSGFFRPSSSPGNDGNVTASTAGNGNKAMNMFPNHQIFDLYVYMDDSDLPFRQ 92
Query: 596 FDNS--NLIWQHSGLVYGDWYSGPNGDGSYS-HSASITPSFALKIMDPFIYMFIL 751
FD++ LIW +G+ Y DW SG N DGS++ H TP+ L+ +++ FI+
Sbjct: 93 FDSAPEKLIWMRNGMKYDDWISGDNEDGSHTIHKNFPTPAALLRNDSLWLHTFIV 147
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ S SP LTI K LL++ SLL
Sbjct: 78 INSNGSICLD--ILRSQWSPALTISKVLLSICSLL 110
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +1
Query: 712 VKNNGSIYLHVYIVPSGKSPDLTIDKTLLALTSLL 816
+ +NGSI L I+ S SP LTI K LL++ SLL
Sbjct: 78 INSNGSICLD--ILRSQWSPALTISKVLLSICSLL 110
>Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical
protein T22H2.2 protein.
Length = 527
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 307 SVVAADDNLDINARVEEERRRMQPTKLESFFAITKSLIIRAL 432
S++ DDN D++++ R PT + ++ +T ++I +L
Sbjct: 195 SLLTDDDNKDVSSKSNTHSERCDPTTIIAYLLLTGLVLITSL 236
>AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical
protein K09F6.6 protein.
Length = 1010
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +1
Query: 325 DNLDINARVEEERRRMQPTKLESFFAITKSLIIRALXSLFYYFYV*TAICSKNRYQ*SI* 504
++LD + ++E RR + E+ ++ KS RAL S+ Y Y + + +Y
Sbjct: 892 ESLDCSEPIDEIMRRREGR--ENAKSVFKSAFSRALKSVRAYHY--DLVTNTLKY----- 942
Query: 505 CPKSTSCEYVCKWNYTRH 558
C + +C+ WN RH
Sbjct: 943 CEERNTCKDHLSWNQVRH 960
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 596 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPS 706
F L WQ +YGD + N D HSAS +P+
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPT 430
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 596 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPS 706
F L WQ +YGD + N D HSAS +P+
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPT 430
>AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical
protein H27C11.1b protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 596 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPS 706
F L WQ +YGD + N D HSAS +P+
Sbjct: 298 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPT 330
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 596 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPS 706
F L WQ +YGD + N D HSAS +P+
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPT 430
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,643,661
Number of Sequences: 27780
Number of extensions: 365394
Number of successful extensions: 799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -