Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M24
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.24 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 593 PPPXGXGGXFXXPPPPPP 646
           PPP G  G    PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +2

Query: 839 PPPXKXXXKXXPPXXGGGPPPXXXKXXXXXPPPXXPPXGP 958
           P P         P  GG PPP          PP  PP  P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 593 PPPXGXGGXFXXPPPPPP 646
           PPP   G     PPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/58 (31%), Positives = 18/58 (31%)
 Frame = -3

Query: 957 GPXGGFXGGGXXXXFLXSXGGGPPPXXGGXXFXXXXXGGGXXGXXXXXPPPXXXGXAP 784
           G  GGF G G         GGGP    GG        GG   G       P   G  P
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 646 GGXGGGXXKTPPXPXGGGXFFXXG 575
           GG GGG    PP P G G F   G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFG 214


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 593 PPPXGXGGXFXXPPPPPP 646
           PPP G       PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +2

Query: 809  GGXXXXXPXXPPPXKXXXKXXPPXXGGGPPPXXXKXXXXXPPPXXPP 949
            GG     P   PP +      P      PPP         PPP  PP
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMS---VPPPPSAPP 1722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,556
Number of Sequences: 5004
Number of extensions: 36795
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)