Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M23
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   2.6  
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    26   6.1  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   6.1  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 579 SEVAKPDRTIKIPGVSPWKLPRALSCSDPCRLPD 680
           + + K D ++ IPGV  +      S  DPC  PD
Sbjct: 281 TNLPKHDASVHIPGVGDFVTSDVSSLEDPCPPPD 314


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 765 ERHTPELRYLQREL*ESATLPEGRKADRYPVSGRGRNRRAHEGASR 628
           ERH P L     E      +P+G+  + +  SG  +NR+  E   R
Sbjct: 177 ERHMPGLIRATNEWFRIYKIPDGKPENSFAFSGECKNRKYAEEVVR 222


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 667 QGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDAR-QGGGAYGK 527
           QG+  +SAR S+ G+  GI  +L   + S    DF +    G G +G+
Sbjct: 522 QGTFSKSARPSYGGQQDGIIDLLYRKSVSRYETDFEELEFLGRGGFGE 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,000
Number of Sequences: 5004
Number of extensions: 68410
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)