Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M23
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 33 0.39
09_06_0323 - 22337217-22337450,22338263-22339204 31 1.2
01_01_1201 + 9678893-9679311,9679415-9679721 31 1.2
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829... 31 1.6
01_01_1008 - 7987936-7988628,7988923-7989102 31 1.6
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 30 2.1
12_02_0082 - 13372997-13373863,13373928-13374386 30 2.8
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 30 2.8
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067... 29 4.9
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656... 29 4.9
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 29 6.4
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.4
11_06_0012 + 19251085-19251666 28 8.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.5
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 32.7 bits (71), Expect = 0.39
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +2
Query: 518 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL--PLTGYLSA 691
CWR + T D Q + +KD P + PSC L+F PL PL L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342
Query: 692 F 694
F
Sbjct: 343 F 343
>09_06_0323 - 22337217-22337450,22338263-22339204
Length = 391
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +2
Query: 584 GGETRQDYKDTRRFPLEAPSCALLFRPLPLTGYLSAFLPSGSVALSHSSRCRYLSSGVCR 763
GGE ++ RRF AP ALL R L ++ + A++HS+RCR+ + G
Sbjct: 166 GGEAAREL--ARRFAA-APRRALLSRREQLRAAPASPAAMAAAAVAHSTRCRFRADGAEH 222
Query: 764 SLQLGC 781
+ + C
Sbjct: 223 EVAVVC 228
>01_01_1201 + 9678893-9679311,9679415-9679721
Length = 241
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -3
Query: 778 AQLERTTYTRTEIPTA*AMRKRHASRREKGGQVSGKRQGSEQESAR---GSFQGETPG 614
A ++++ R E A + HA+RR++ G G G+ QESAR G+ + + PG
Sbjct: 2 ASMQKSREERAEAAAHRAADELHAARRDEPGGGGGGMLGTVQESARSLLGAVRDKIPG 59
>08_02_1631 +
28381248-28381418,28382069-28382144,28382925-28382995,
28383375-28383460,28384359-28384423,28384727-28385067
Length = 269
Score = 30.7 bits (66), Expect = 1.6
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +2
Query: 524 RFSIGSAPLTSITKID-AQVRGGETRQDYKDTRRFPLE-APSCALLFRPLPLTGYLSAFL 697
RFS+ +APL + + D A RG +TR+ + L+ P C +P G+
Sbjct: 178 RFSL-AAPLEVMGRHDNALKRGRDTRKCRRCPPPVSLQMTPRCFTAIKPTQAHGHRCTGT 236
Query: 698 PSGSVALSHSSRCRYLSSGVCRS 766
P SV S CR+ +G+CRS
Sbjct: 237 PCRSV-----SACRHRYAGLCRS 254
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 721 RKRHASRREKGGQVSGKRQGSEQESARGSFQGETPG 614
R R RR GG+V+G+ + RG+++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 612 IPGVSPWKLPRALSCSDPCRLPDTCPPFSLRE--AWRFLIAHAVGISVRVYVVRSSW 776
+P PW LP + + C +P PP L++ +W+ +G+++ ++ ++ W
Sbjct: 1278 LPKRKPWPLPWSGGVTSVCLIPPWPPPIRLKQCRSWK------IGVAISLFAWKAQW 1328
>12_02_0082 - 13372997-13373863,13373928-13374386
Length = 441
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 641 SCALLFRPLPLTGYLSAFLPS 703
SCALLF P+PL G LPS
Sbjct: 164 SCALLFSPMPLDGPTLGLLPS 184
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 735 QREL*ESATLPEGRKAD-RYPVSGRGRNRRAHEGASRGKRLVS 610
QREL AT P D R ++GR + RR + A+R +R VS
Sbjct: 32 QRELPRQATPPPRGTGDLRDQINGRRKARRTRDDANRSRRHVS 74
>06_03_0824 +
25105450-25105482,25105649-25106485,25106580-25106738,
25106830-25106886,25106971-25107202,25107338-25107638,
25107703-25107976,25108051-25108152,25108244-25108525
Length = 758
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +2
Query: 521 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL--PLTGYLSAF 694
WR + T D Q + +KD P + PSC L+F PL PL L AF
Sbjct: 622 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAF 681
>03_02_0225 +
6565337-6565369,6565564-6565734,6566113-6566400,
6566495-6566653,6566745-6566801,6566886-6567117,
6567253-6567553,6567618-6567891,6567966-6568067,
6568159-6568440
Length = 632
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +2
Query: 521 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPL--PLTGYLSAF 694
WR + T D Q + +KD P + PSC L+F PL PL L AF
Sbjct: 496 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYAF 555
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 642 RALSCSDPCRLPDTCPPFSLREAWRFLIAHA 734
R L+C C P CPP+S W+ ++ A
Sbjct: 466 RELNCKSICHSP-MCPPYSAMTEWQHMVLSA 495
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 350 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 505
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>11_06_0012 + 19251085-19251666
Length = 193
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 766 RTTYTRTEIPTA*AMRKRHASRREKGGQVSGK 671
RTT T E A R+RH RR+ GG G+
Sbjct: 69 RTTATAVEAQQA-LRRRRHGGRRDSGGGAGGR 99
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 299 NESAN---ARGEAVCVLGALPLPRSLTRCAR 382
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,240,943
Number of Sequences: 37544
Number of extensions: 555019
Number of successful extensions: 1830
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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