Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M23
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    34   0.12 
U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    31   1.1  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    29   3.3  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 591 KPDRTIKIPGVSPWKLPRALSCSDPCRLPDTCPPFSLREAWRFLIAHAVGISVRVY 758
           K   +I +PGV   ++    S  DPC LPD     +L E  R + A   G+   +Y
Sbjct: 220 KNHSSIHVPGVGDMRISNVTSLPDPCPLPDEIKKRALNEKERKVYAPFSGLGGVIY 275


>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 756 TPELRYLQREL*ESATLPEGRKADRYPVSGRGRNRRAHEGAS 631
           T +L  +QRE  E   +PEG+KA R P S    + +++EG S
Sbjct: 71  TQKLEKMQREQMERLQVPEGQKA-RTPESAEAESPKSNEGPS 111


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 769 ERTTYTRTEIPTA*AMRKRHASRREKGGQVSGKRQGSEQESARGSFQ 629
           E  T T T   +    +K  A+++  GG  SG   GS+Q+ A G+ Q
Sbjct: 731 EAPTATATTPKSGRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQ 777


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 769 ERTTYTRTEIPTA*AMRKRHASRREKGGQVSGKRQGSEQESARGSFQ 629
           E  T T T   +    +K  A+++  GG  SG   GS+Q+ A G+ Q
Sbjct: 609 EAPTATATTPKSGRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQ 655


>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical
           protein C34G6.1 protein.
          Length = 1768

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 743 LSSGVCRSLQLGCVHEPPPIQP 808
           ++ G+CR L+  CV E  P++P
Sbjct: 313 ITQGICRFLEAACVDETCPLEP 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,235,978
Number of Sequences: 27780
Number of extensions: 417390
Number of successful extensions: 1105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)