Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M21
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    30   0.50 
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   6.2  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   6.2  

>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 702 LSSVASEDSPLLSVPLKQLFL*ALHHRFPLL*AASVTTVAIFYLLKATVRLRNGCKDGET 523
           LSSVAS      ++ L++L    LH   P+L    + T A+ ++      LR G K  + 
Sbjct: 274 LSSVASGTPSANAILLEELLSNMLHANHPILDYVLMNTAALLHVAGMAESLREGVKIAQQ 333

Query: 522 AVRFLSTIR 496
           ++   + +R
Sbjct: 334 SISSGAALR 342


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 60  RKLTVVFLTCFIFKYILCVLAFFYFV 137
           R LTV+ +  F+F +IL ++AF  F+
Sbjct: 489 RILTVILVVYFLFWHILGLVAFLIFI 514


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 335 VVLIAILGISLLVTVSYNLAEGVFDDIENENGTETLSTKTTAKPVIIPSDVPL----PLI 502
           +V +  +G + L+    +L++GVFDD       + L  +        P ++PL    P +
Sbjct: 211 IVNLIPIGGAKLIQGGNSLSKGVFDDSRTREIVDNLMKQGFMHQPESPLNMPLQSARPFV 270

Query: 503 VERNLTAV 526
           V R L AV
Sbjct: 271 VPRKLYAV 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,488,299
Number of Sequences: 5004
Number of extensions: 71194
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)