Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M21
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1172 - 28147957-28148274,28149362-28149877 34 0.17
05_01_0248 - 1864092-1864204,1864570-1864608,1864661-1864730,186... 32 0.70
08_02_0638 + 19603399-19604679 31 0.93
04_03_0754 + 19307886-19308164 30 2.8
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 29 5.0
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 29 6.6
12_02_0091 - 13498143-13498499,13499005-13499301 28 8.7
07_01_0998 - 8414492-8415175 28 8.7
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 28 8.7
>06_03_1172 - 28147957-28148274,28149362-28149877
Length = 277
Score = 33.9 bits (74), Expect = 0.17
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +3
Query: 228 PLARSVRPWCSRCTCTTPVWAAYTRSDYSTFNVPYALYSSPSSGFHYW*PCPIISLRACS 407
P SV P+ T P A T Y+ ++ + SPSS HYW + L AC+
Sbjct: 16 PSPPSVYPFLPPATFIPPPPPAATAEPYAPPSLIISPPPSPSSVLHYWGLAVAVVLVACT 75
Query: 408 MTLKMKMVRRHCQRRPR 458
+++ M + +RR R
Sbjct: 76 ISIWMGYMLAKFERRRR 92
>05_01_0248 -
1864092-1864204,1864570-1864608,1864661-1864730,
1864976-1865043,1866114-1866201,1866282-1866309,
1866406-1866451,1866571-1866796
Length = 225
Score = 31.9 bits (69), Expect = 0.70
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = +3
Query: 513 TSQLFRRLYSHSSILQWPLKDKKSPPWSRKPPTKEEIDDAVLKGKAALKELIKVENLRKP 692
TS+L L S S LQ PL+ +PP R PPT A G E KVE + +P
Sbjct: 36 TSRLL--LASRSRGLQRPLRVNHAPP-RRLPPTAARAQSAAAAGYQPESEFYKVEAILRP 92
>08_02_0638 + 19603399-19604679
Length = 426
Score = 31.5 bits (68), Expect = 0.93
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -3
Query: 631 ASSISSFVGGFRDHGGDFLSFKGH 560
AS+ SS + G +DHGG +LSF+ H
Sbjct: 254 ASAPSSSLLGMQDHGGSYLSFQSH 277
>04_03_0754 + 19307886-19308164
Length = 92
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 627 HRFPLL*AASVTTVAIFYLLKATVR-LRNGCKDGETAVRFLSTIRG 493
HRFPL A+S+ T I T+R +R GC++ ++ RG
Sbjct: 5 HRFPLKAASSIVTDQINGATVVTIREVRRGCRERSVVASATNSTRG 50
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 861 VPLISGPTPNTTIGAYLSKQGFSGVLSS-IGSISEWLDVNPQWPPLSAPCWRGRLSSVAS 685
+PL++ + ++ A S+ FS +LS GS + PP S + G +SS
Sbjct: 8 LPLVNSRPVSLSLAA--SRSSFSSLLSGGAGSSLNLMTPPSSLPPSSPSSYFGGVSSSGF 65
Query: 684 EDSPLLSVP 658
DSP+L P
Sbjct: 66 LDSPILLTP 74
>04_04_1105 - 30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -2
Query: 422 HFQCHRTRPQRDYRTRSPIVKSRGWR*VQRIWHIESAVIASGICGPHRSRTRTPAAPGA 246
H+ H T +R P V WR + W+ E A AS C R+++ ++ G+
Sbjct: 839 HYDSHITEEER-LADCDPRVLKEQWRFLVAFWNTEEAQAASARCKASRAKSTYISSTGS 896
>12_02_0091 - 13498143-13498499,13499005-13499301
Length = 217
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +3
Query: 408 MTLKMKMVRRHCQRRPRLSR*SYHLMFHSL*SWRGTSQLFRRLYSHSSILQWPLKDKKSP 587
+TL + ++ + R P +R S S S + +Q R YS S++L L +P
Sbjct: 62 LTLLLSLISGNVLRNPPATRSSQR---ESRNSTKVETQDMRPPYSSSTLLSHSLHTTAAP 118
Query: 588 PWSRKPP 608
P+S PP
Sbjct: 119 PFSMPPP 125
>07_01_0998 - 8414492-8415175
Length = 227
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +2
Query: 296 YQKRLQHFQCAICVVLIAILGISLLVTVSYNLAEGVFDDIENENGTETLSTKTTAKPVII 475
Y R F CA+C++L+A + + ++ +Y V +E+ + T + + ++ +
Sbjct: 28 YDTRETIFYCAVCLLLVAAVVLLAVLLAAYGFIRHVSITVESASLTR-FNLSSPSEATAL 86
Query: 476 PSDVPLPLIVERNLTAVS 529
++ L L V A+S
Sbjct: 87 AYNLSLTLAVRNKNWAMS 104
>01_06_0556 +
30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 594 SRKPPTKEEIDDAVLKGKAALKELIKVENLRKPLKRDD 707
SR+P +E+DD AAL+ L + LR L R D
Sbjct: 55 SRRPSAADEVDDEEALRWAALERLPSFDRLRTGLMRAD 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,364,588
Number of Sequences: 37544
Number of extensions: 500539
Number of successful extensions: 1547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -