Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M19
         (921 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   150   2e-36
AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical ...    29   3.5  
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    28   8.2  
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    28   8.2  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  150 bits (363), Expect = 2e-36
 Identities = 64/83 (77%), Positives = 72/83 (86%)
 Frame = +1

Query: 85  MPLAIDLLHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCS 264
           MPLA+DLLHP P  E R HKLKRLV HPNSYFMDVKC GC+KI+TVFSHA  VVVC GC+
Sbjct: 1   MPLAVDLLHPEPQREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCN 60

Query: 265 TILCQPTGGRARLTEGCSFRRKQ 333
           T+LCQPT G+A+LTEGCSFR+KQ
Sbjct: 61  TVLCQPTRGKAKLTEGCSFRKKQ 83


>AC024200-2|AAF35997.2|  189|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.10 protein.
          Length = 189

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 106 LHPSPASEXRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVC 252
           LH +P      H  +R VP    + MD+KCP C+K+         +V+C
Sbjct: 81  LHATPG-RLHGHHSRRSVP---VFMMDMKCPVCHKVVPSDDADIHLVMC 125


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 115 SPASEXRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 276
           +P  E R  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 115 SPASEXRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 276
           +P  E R  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 517 TPRRERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,778,282
Number of Sequences: 27780
Number of extensions: 179768
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)