Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M18
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical p...    30   2.0  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    30   2.6  
Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell l...    28   7.9  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    28   7.9  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical
           protein K10C8.3b protein.
          Length = 141

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -2

Query: 389 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 213
           R  S+ ++  +  +RP + R ++ P P       R RS +   + K +  V     P+H
Sbjct: 17  RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -3

Query: 400 PGGAEP*AGTSGPPQRPGAQAQ 335
           PGG  P  G SGPP RPGA  Q
Sbjct: 204 PGGDAP-PGPSGPPGRPGAPGQ 224


>Z68213-3|CAA92438.1|  223|Caenorhabditis elegans Hypothetical
           protein C01F6.5 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -3

Query: 376 GTSGPPQRPGAQAQRETLGVRS 311
           GT+GP +RP AQ +R++ G+R+
Sbjct: 38  GTAGPSRRPTAQPRRQSGGIRT 59


>U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform a protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 406 TPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 302
           T  GGA P +GT+ PP  P   +    L +R  Q+
Sbjct: 263 TSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 297


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 406 TPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 302
           T  GGA P +GT+ PP  P   +    L +R  Q+
Sbjct: 563 TSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 597


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 372 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 208
           +  HH+ P P H   H   +  +  E++   ++ DAP    T  T LV  +S   P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,428,772
Number of Sequences: 27780
Number of extensions: 373569
Number of successful extensions: 1579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1576
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)