Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M18
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   5.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   5.0  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   5.0  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   5.0  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   5.0  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   5.0  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   5.0  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   5.0  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   5.0  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   5.0  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   5.0  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   5.0  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   6.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 754 SRSSMKLSLLPDCRTPGHAEVHHVV--VHNSLPTYNCVLGEINL 629
           S +S  ++L   C  P +     V+  V  S+PTY C LG+  L
Sbjct: 623 SLNSTNVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGKAYL 666


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 706 RGSCSPAARTASCCSWIR*RASRL*ELHHLRFEE 807
           +G C P  RT S   W + + + + E   LR+ E
Sbjct: 22  QGFCQPTQRTMSKIQWRKPKPAMVEEKTQLRYLE 55


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 849 MNMKVRSRVARSGRLFKTQMMQLL 778
           ++MK++  V +SGR+  TQ  + L
Sbjct: 353 VSMKIKQNVPQSGRVNNTQRNEYL 376


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNSLSNNYNYNN 96


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 312 PKIISNNNSLSNNYNYNN 329


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 312 PKIISNNNSLSNNYNYNN 329


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 519 PRVSMMAKRLRNSYNYNN 572
           P++      L N+YNYNN
Sbjct: 79  PKIISNNNPLSNNYNYNN 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,101
Number of Sequences: 438
Number of extensions: 4831
Number of successful extensions: 32
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)