Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M18
         (897 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32010.1 68417.m04557 transcriptional factor B3 family protei...    33   0.19 
At4g12450.1 68417.m01970 expressed protein                             29   3.2  
At1g27060.1 68414.m03299 regulator of chromosome condensation (R...    29   4.2  
At5g45350.1 68418.m05567 proline-rich family protein contains pr...    29   5.5  
At5g40470.1 68418.m04908 expressed protein                             28   9.7  
At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam...    28   9.7  
At1g49530.1 68414.m05551 geranylgeranyl pyrophosphate synthase (...    28   9.7  

>At4g32010.1 68417.m04557 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518, VIVIPAROUS1 protein [Triticum aestivum]
           GI:7801376; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 780

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 785 NSYSRDALQRIQEQHEAVLAAGLQDPRARGGTSCCCAQQPPN 660
           NS     +    EQ E  +AA  + PR R G SC    QPP+
Sbjct: 600 NSLGNAGITTTGEQGEITVAATTKHPRHRAGCSCIVCSQPPS 641


>At4g12450.1 68417.m01970 expressed protein
          Length = 277

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 392 CRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRS 222
           CR   RD+  T    +PGT +   +P P+    C   R E   + + P+R   S R+
Sbjct: 36  CRKNVRDVVNT----QPGTVKKNPKPDPSLRRLCSSRRPELDSNSHHPTRRSVSARA 88


>At1g27060.1 68414.m03299 regulator of chromosome condensation
           (RCC1) family protein low similiarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 386

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 339 AWAPGLCGGPDVPAHGSAP 395
           +W  G CGGPDV A  S P
Sbjct: 229 SWGRGFCGGPDVHAPQSLP 247


>At5g45350.1 68418.m05567 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 177

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 345 APGLCGGPDVPAHGSAPPGG 404
           APG  G P  P HG  PP G
Sbjct: 73  APGYGGYPPAPGHGGYPPAG 92


>At5g40470.1 68418.m04908 expressed protein
          Length = 496

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 829 QGSAVGTTLQNADDATLTAETLFSESRSSM 740
           +G  +GTT   +D+  L AET+FS+   S+
Sbjct: 87  RGVTIGTTPSRSDEEHLKAETIFSDELISI 116


>At1g79690.1 68414.m09294 MutT/nudix family protein contains Pfam
           NUDIX domain [PF00293]; very low similarity to Chain A
           and Chain B of Escherichia coli isopentenyl
           diphosphate:dimethylallyl diphosphate isomerase
           [gi:15826361] [gi:15826360]
          Length = 772

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 527 DSRRCWPKSWSLTIAGHLASRD 462
           D +  WP  W ++ AGH+++ D
Sbjct: 54  DDKDSWPGQWDISSAGHISAGD 75


>At1g49530.1 68414.m05551 geranylgeranyl pyrophosphate synthase
           (GGPS6) / GGPP synthetase / farnesyltranstransferase
           identical to gi:2578821; similar to geranyl geranyl
           pyrophosphate synthase GI:2578822 from [Arabidopsis
           thaliana]
          Length = 336

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 620 IEFKIYLTENTVIRWEAV--VHNNMMYLRVPGGPAVR 724
           ++  I L  N V  WE V  VH  M Y  +PGG  VR
Sbjct: 47  LDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVR 83


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,549,854
Number of Sequences: 28952
Number of extensions: 340024
Number of successful extensions: 1046
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)